LOC120549843


Basic Information

Item Value
gene id LOC120549843
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15713132 ~ 15714089 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637445.1
TGTGGAGGAGAGCTATAAAAGTTAGTGAGTAAGAGTCCTTCCAACAGAACGAGGACCAGgagctactactactactactactactactactactactacagATAACTGTTCAGGTTCAGTCTGGTGTTCAGCAGTCAGAATGATGACTCCCGCTCTCCTCTCTGTGGCCTTGCTGCTGTTGCTTCTTCCTGGGGTTCCATCTGCAGATCCCACTCTATATCCCATCAGTGTCCTGGTGAAAAACTCTGTAAACCACAGTCCCAATAAGACCTACAGCACTTCTGTGGTTTACAGAGGAATCTTGCGTGGGGAGACCG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko00910 Nitrogen metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637445.1 True 317 lncRNA 0.48 3 15713132 15714089

Neighbor

gene id symbol gene type direction distance location
LOC120549813 NA coding downstream 6856 15702979 ~ 15706276 (-)
LOC120549823 NA coding downstream 14679 15695804 ~ 15698453 (-)
LOC120570576 LOC104937503,LOC103370335,LOC101474512 coding downstream 30340 15651473 ~ 15682792 (-)
tnfaip1 tnfaip1 coding downstream 75176 15626090 ~ 15637956 (-)
sgsm2 sgsm2 coding downstream 88872 15538653 ~ 15624260 (-)
LOC120553928 NA coding upstream 10068 15724157 ~ 15726157 (-)
sorl1 NA coding upstream 190800 15904889 ~ 16008065 (-)
bco2b bco2,LOC104948304,LOC101485476,LOC102288764 coding upstream 302309 16016398 ~ 16023501 (-)
il4i1 il4i1 coding upstream 350355 16064444 ~ 16072903 (-)
LOC120547208 adamts15 coding upstream 476042 16190131 ~ 16208976 (-)
G17264 NA non-coding downstream 70142 15642003 ~ 15642990 (-)
G17253 NA non-coding downstream 177905 15533876 ~ 15535227 (-)
G17225 ulk2,LOC104954052 non-coding downstream 271622 15434214 ~ 15441510 (-)
G17222 NA non-coding downstream 316793 15396102 ~ 15396339 (-)
G17221 NA non-coding downstream 319712 15393206 ~ 15393420 (-)
G17389 NA non-coding upstream 302833 16016922 ~ 16048016 (-)
G17466 NA non-coding upstream 686534 16400623 ~ 16400836 (-)
G17499 NA non-coding upstream 703206 16417295 ~ 16418742 (-)
G17571 NA non-coding upstream 982724 16696813 ~ 16698009 (-)
G17579 NA non-coding upstream 996680 16710769 ~ 16766469 (-)
lyrm9 lyrm9 other downstream 62085 15646641 ~ 15651047 (-)
si:ch1073-145m9.1 LOC104930674,LOC104957430,LOC102079100,LOC108239365,LOC105418711 other downstream 387333 15318840 ~ 15325799 (-)
caln1 caln1,LOC103372560,LOC107097061 other downstream 1390299 14247928 ~ 14322833 (-)
gpr4 gpr4,LOC103368504,LOC104964910 other downstream 1626368 14078577 ~ 14086764 (-)
G16880 NA other downstream 1890075 13755949 ~ 13823057 (-)
sdhdb sdhd other upstream 331919 16046008 ~ 16060408 (-)
G17597 NA other upstream 1134072 16848161 ~ 16930994 (-)
xaf1 LOC107094331 other upstream 1758858 17472947 ~ 17478903 (-)
LOC120552194 NA other upstream 2085910 17799999 ~ 17890661 (-)
zgc:165508 fam131a,LOC102799247 other upstream 2413377 18127466 ~ 18151968 (-)

Expression


Co-expression Network