LOC120554459


Basic Information

Item Value
gene id LOC120554459
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8874341 ~ 8874620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638456.1
GGTCAATGATGAGCAGTAAAAGGTCTGATTACCCAGAATCCTCTCCTGCAGTCCTCTGGCTCCCAGCAGCCCATGCTCTGTTTTCCCATCATGCCCTAGTGGTGCAGTGGTGGTCTCAGCAGCTGCTGACAgacacaggaagtgacatcacagCGTGAGTCTGCACAGAGAGCCTGCAGGCTCAGTGTGATGATGACTCACTTCCAACAGAACCAATCAGAACGGAGCGTCAGGCCGAAGGGAGAGGAGGGACATGATCTCAAGTTTTCAACCTGAGACC

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638456.1 True 280 guide_RNA 0.54 1 8874341 8874620

Neighbor

gene id symbol gene type direction distance location
LOC120554461 NA coding downstream 13701 8860361 ~ 8860640 (-)
LOC120554466 NA coding downstream 19749 8854312 ~ 8854592 (-)
LOC120543840 LOC100693035,LOC101486393,LOC103152962,LOC103475253,LOC106951493 coding downstream 32965 8828413 ~ 8841376 (-)
LOC120543940 NA coding downstream 189857 8682663 ~ 8684484 (-)
LOC120543728 NA coding downstream 236254 8622482 ~ 8638087 (-)
LOC120543996 NA coding upstream 46816 8921436 ~ 8923366 (-)
LOC120551100 NA coding upstream 321367 9195987 ~ 9201417 (-)
LOC120544027 ap2m1,LOC108440593,LOC106580654,LOC106612407 coding upstream 613702 9488322 ~ 9502894 (-)
LOC120551135 LOC101071594,LOC102800178,LOC103356830 coding upstream 649587 9524207 ~ 9531095 (-)
LOC120543835 NA coding upstream 656401 9531021 ~ 9543141 (-)
G15826 NA non-coding downstream 72363 8801446 ~ 8801978 (-)
G15819 NA non-coding downstream 95799 8778030 ~ 8778542 (-)
G15812 NA non-coding downstream 123393 8750411 ~ 8750948 (-)
G15809 NA non-coding downstream 129995 8735489 ~ 8744346 (-)
G15807 NA non-coding downstream 177195 8696745 ~ 8697146 (-)
G15832 NA non-coding upstream 10236 8884856 ~ 8885515 (-)
LOC120544086 NA non-coding upstream 11306 8885926 ~ 8886911 (-)
LOC120544051 NA non-coding upstream 20164 8894784 ~ 8896382 (-)
G15836 NA non-coding upstream 43404 8918024 ~ 8920817 (-)
G15851 NA non-coding upstream 94662 8969282 ~ 8970613 (-)
LOC120544569 dgkd,LOC102780004 other downstream 132218 8692074 ~ 8742123 (-)
G15771 NA other downstream 217378 8601917 ~ 8656963 (-)
G15757 NA other downstream 404581 8468357 ~ 8469760 (-)
LOC120551075 LOC103475274,LOC105922519 other downstream 719038 8137301 ~ 8155303 (-)
trnaa-cgc NA other downstream 938014 7936256 ~ 7936327 (-)
spint2 NA other upstream 5818 8880438 ~ 8914977 (-)
G15820 NA other upstream 97294 8971914 ~ 9046433 (-)
LOC120543625 NA other upstream 256364 9130984 ~ 9210517 (-)
G15903 NA other upstream 363347 9237967 ~ 9238784 (-)
eif2a eif2a other upstream 473589 9348209 ~ 9433655 (-)

Expression


Co-expression Network