LOC120571684 (samd3,LOC101476819)


Basic Information

Item Value
gene id LOC120571684
gene name samd3,LOC101476819
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4901444 ~ 4902668 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641263.1
tttagtaacttgacacttatggggattaaatgaaaagatcattaacagggaacatttataaatggaagtatttataatttgacactCTTTGAATCTTTTAATTGTTCAGTTTCAGATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGaagactgagaagaaACTGACCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccacgatgaacaggaaatccatgacatacacaccaagcgcactactgttctccacgtccttcctgtgtatctg

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
uncharacterized protein LOC101476819

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641263.1 True 500 lncRNA 0.41 4 4901444 4902668

Neighbor

gene id symbol gene type direction distance location
LOC120544909 NA coding downstream 762891 4088176 ~ 4138553 (-)
LOC120544902 LOC103361205,LOC106936657,LOC106910224,LOC103150884,LOC103475299 coding downstream 823316 4052192 ~ 4078128 (-)
LOC120571031 NA coding downstream 977588 3921782 ~ 3923856 (-)
LOC120571265 fgf12,fgf12b,LOC104939444,LOC102791340,LOC102235588,LOC107670129 coding downstream 1109762 3739762 ~ 3791682 (-)
LOC120570954 NA coding downstream 1178773 3662000 ~ 3722671 (-)
LOC120571626 NA coding upstream 46511 4949179 ~ 4975582 (-)
LOC120544953 NA coding upstream 350326 5252994 ~ 5267295 (-)
LOC120570786 NA coding upstream 399137 5301805 ~ 5326758 (-)
LOC120548458 NA coding upstream 563282 5465950 ~ 5472587 (-)
LOC120544977 NA coding upstream 574312 5476980 ~ 5484148 (-)
G14649 NA non-coding downstream 7391 4811476 ~ 4894053 (-)
G14576 NA non-coding downstream 28758 4871269 ~ 4872686 (-)
G14644 NA non-coding downstream 113142 4787573 ~ 4788302 (-)
G14581 NA non-coding downstream 120343 4768650 ~ 4781101 (-)
G14641 NA non-coding downstream 121034 4779995 ~ 4780410 (-)
G14569 NA non-coding upstream 11437 4914105 ~ 5006775 (-)
G14662 NA non-coding upstream 36172 4938840 ~ 4939162 (-)
G14560 NA non-coding upstream 47657 4950325 ~ 4955436 (-)
G14583 NA non-coding upstream 52984 4955652 ~ 4956414 (-)
G14665 NA non-coding upstream 85333 4988001 ~ 5035088 (-)
LOC120571085 mb21d2 other downstream 846360 4028740 ~ 4055084 (-)
LOC120544895 LOC102787186 other downstream 885488 3899453 ~ 4015956 (-)
G14426 il1rap,LOC106536183,LOC107379882,LOC108229411,LOC106536182 other downstream 1178812 3472937 ~ 3722632 (-)
LOC120570817 NA other downstream 1672620 3056729 ~ 3228824 (-)
G13995 iws1 other downstream 1916946 2981061 ~ 2984498 (-)
G14579 NA other upstream 160320 5062988 ~ 5111979 (-)
G14553 LOC108250350,LOC108250351,LOC108241855,LOC108249964,LOC107380983,LOC108242154,LOC108242155 other upstream 256662 5159330 ~ 5350376 (-)
LOC120554300 cldn1,LOC103361214 other upstream 586588 5489256 ~ 5510035 (-)
G14722 NA other upstream 607853 5510521 ~ 5533827 (-)
col4a4 LOC104946957 other upstream 652806 5555474 ~ 5639200 (-)

Expression


Co-expression Network