LOC120572178


Basic Information

Item Value
gene id LOC120572178
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6690031 ~ 6690891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641380.1
acttctGCATTTTTCCAGCCCGCCCATAGGGGGTGGGACCAATGGGTGGGACCCATAGCCAGTATGGGGACCTCCCTCCCAGATTGTAAACAGTGTCAGCCATCCTGTAGCTAAGCTACCCCGCTCTTGCTCTTGTGGAGAAAGCAGAGTAGTAGATTCACCACGATGGCAGAAGGTAGTTCTGAAGACGATATGGCAGAAGGTGATTTTGAAGATCTGGTGCGCGAATCTGATGCTCGTGGCTACCTGTACGAGCCGAATTACAGCGAGGAACAGTTGCGGATGATAGAGGAACAAGAGGCTGCCGGAGCAGCTGCTGTAGCAGAGGAGCGAGACTTGCCTAGCGGTATTGAGGAAGATCCCGGGCAGACTCGAGCTGGGGCGGATTGGTGGTGTCAGTGTTCTCGCAGAGCGCAAATGGACACAGAGAGTCCTGTTGCTTTCAGGATCCCGAAAGTGAATTGGAAACGCCAACCAAAGCCCGCAGGGAGAAACTGACGCCTGAGTATAAAACAATATCGCCTAACAGCCTACCGTCACTTCGTGGAATGGGTCCTTTGAGATTGGGAAAAGGCTATCGTCTTGTTTTTCCTGCCTGTGTTGTTCAGGACATCAGACGGAGATATCCAGCTCCTGACGGACAATACTGTGGCTATAAAGAAACTATTGAAGCTCTGGATGAGCTATGAGTGTGAAATTGAtcatattatgttttttaattaaaagtttaaaatgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641380.1 True 738 lncRNA 0.49 2 6690031 6690891

Neighbor

gene id symbol gene type direction distance location
LOC120545443 NA coding upstream 19969 6665150 ~ 6670062 (+)
LOC120573309 NA coding upstream 51216 6637883 ~ 6638815 (+)
LOC120570331 NA coding upstream 54506 6634599 ~ 6635525 (+)
LOC120545416 NA coding upstream 72308 6616797 ~ 6617723 (+)
LOC120545410 NA coding upstream 76793 6612312 ~ 6613238 (+)
LOC120545448 NA coding downstream 8611 6699502 ~ 6709328 (+)
LOC120545475 NA coding downstream 32903 6723794 ~ 6724723 (+)
LOC120545480 NA coding downstream 38272 6729163 ~ 6734845 (+)
LOC120545496 NA coding downstream 75561 6766452 ~ 6767381 (+)
LOC120545500 NA coding downstream 83125 6774016 ~ 6774945 (+)
G14939 NA non-coding upstream 111578 6578222 ~ 6578453 (+)
G14930 NA non-coding upstream 178145 6511135 ~ 6511886 (+)
G14928 NA non-coding upstream 180057 6508571 ~ 6509974 (+)
G14917 NA non-coding upstream 195381 6494388 ~ 6494650 (+)
G14908 NA non-coding upstream 212885 6476674 ~ 6477146 (+)
G15012 NA non-coding downstream 253431 6944322 ~ 6991913 (+)
G15021 NA non-coding downstream 286908 6977799 ~ 6978105 (+)
G15032 NA non-coding downstream 325904 7016795 ~ 7017311 (+)
G15050 NA non-coding downstream 361295 7052186 ~ 7053965 (+)
G15028 NA non-coding downstream 402237 7093128 ~ 7093466 (+)
spcs2 spcs2 other upstream 272522 6407985 ~ 6417509 (+)
rnf169 NA other upstream 285606 6393062 ~ 6404425 (+)
G14344 NA other upstream 1161412 5510757 ~ 5528619 (+)
G14187 LOC107380983,LOC108250349,LOC108250351,LOC103477369,LOC103473932,LOC107835021,LOC106936810,LOC102294474,LOC102776571,LOC108229490,LOC103360213,LOC107834023,LOC103368570,LOC102214284,LOC102800009,LOC101480046,LOC101470105,LOC102792843 other upstream 1272896 4801340 ~ 5417135 (+)
G14209 LOC102792843 other upstream 2162654 4500173 ~ 4527377 (+)
G15019 NA other downstream 281954 6972845 ~ 6989396 (+)
G15173 LOC102077075 other downstream 707210 7398101 ~ 7399141 (+)
G15234 NA other downstream 800474 7491365 ~ 7492057 (+)
rffl rffl other downstream 1115918 7806809 ~ 7853429 (+)
LOC120543808 NA other downstream 1135719 7826610 ~ 7828087 (+)

Expression


Co-expression Network