LOC120572866


Basic Information

Item Value
gene id LOC120572866
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42838453 ~ 42840995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641502.1
cattctatcacccctttaaatcgTTCTGGTGTTGATAAGTTGTTCTTTTATTAGGTTGCGAGCTGTGAACCTATTGGATACAATTCCTGTCGAGTTATTAATGTCTTTGAACTccggttgtttttttgttgagtaCCAGAATTACGGACTACCCGAAGGATGGCGAGCCTTGCCCAGCAGATCTGTGGACGGGGTTGGATGTGGTGTGGCCAGCCATAACGACCTGCCACAGAGGACTTGGATTTGCATATTCACTCACTCTGATACAGATAAGATACACACTAACCTACCCGGGTAGAAGCATTAGAGTTGATATTGAACACACATACATCCGGATATTTCCCCCTAAGACTGAACTTTCTTTCTCTGAGGCAGAAAGTCTCGTCCTCAATACAGAGGAGCCATAGGGTTGGACCAACCAACTAAAAAAAGACCTACttcttttgtttattattttcattaagaGCTCTATTTTATTTTGGTATATACATCGTATGGTCTGTAAACTCTGTAAATGTTGTTGATTCATGGTGACAGGCAATAAAGCTGTCAACTGTTAACCCAACACGCACTCCCTTTGTGAGTTATCTAATTCAAGTGTATACTCCCATCGGACCTAGAGTGATGTGTCTCATCTGCCAATCAGGTTAGGACCAGAGGTGCTACACTAACGCTAACTATTTGGTAGCTGCCATGCTACAATAGAGAACCTATTACAATCAGATTTTAAGACAGCTCCTAGCTAAACCTAACTAGACTACTAGAGTTGAGCCGGATACTCGGCTGAAACAAGTATCCGGTACGGATAAAGCACTTTTGCCGAGTACGAGTATTATACGAGTAATACGAGTCAATATCTGTGCTCGGATTGAATAAAAATCCTCATTGGGTAGCTGACTGTGTCTGCGTTCTGTGATAGGCTAGTCACACAGCGCCCCTcccctacacacatacagatttattgtgttgctgtgtcccactctgctcactcacacacagaacactgagaagagaacagctctctctctctctctgtctctccctcagtCACTCAAGTTCGCGGGTCTTTTCCGTTAACGTTTAGGGTTTCTTCAgcttcagATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaGGTATGTGGCTCCATAATGTAATTAGGTTTTAATGAAGTGCTACAACTTTATGCATTTAGGCTGCAGTTATGCCATTCTATATGGGAAGTTTAAAAGTTATGATTGAGATGATGGTTTTGTATGCATTTTCTATTACTGAAAGAGTGATTggcagagaagctgtatacttTTGATCGGATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaggaaaaataaagaagaagGGTTCAACATTT
>XR_005641503.1
TTAAAAATATAGTGTATTGTTATATATGATTTTCGCCAAAAATGAATACCCTTGTTTAATAGTTGTGAATGGAGCCACCTTTGGCCGTATGGTGTACTACAGATCTGCTGCGTGTAGTCTCGCGTTACTTCCCTCCCCGatcagagaagctgtatacttTTGATCGGATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaGGTATGTGGCTCCATAATGTAATTAGGTTTTAATGAAGTGCTACAACTTTATGCATTTAGGCTGCAGTTATGCCATTCTATATGGGAAGTTTAAAAGTTATGATTGAGATGATGGTTTTGTATGCATTTTCTATTACTGAAAGAGTGATTggcagagaagctgtatacttTTGATCGGATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaggaaaaataaagaagaagGGTTCAACATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641502.1 True 1421 lncRNA 0.41 2 42838453 42840995
XR_005641503.1 False 487 lncRNA 0.36 2 42838453 42839426

Neighbor

gene id symbol gene type direction distance location
gal3st2 LOC104950586 coding downstream 69887 42739636 ~ 42768566 (-)
fat3a fat3 coding downstream 216493 42393288 ~ 42621960 (-)
ttc36 ttc36 coding downstream 569031 42267074 ~ 42269422 (-)
LOC120547924 NA coding downstream 842106 41886984 ~ 41996347 (-)
cep126 NA coding downstream 985903 41833504 ~ 41852550 (-)
LOC120549271 NA coding upstream 63818 42904813 ~ 42910737 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding upstream 151796 42992791 ~ 43063245 (-)
LOC120553532 NA coding upstream 540131 43381126 ~ 43383213 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding upstream 725585 43566580 ~ 43578411 (-)
omgb omg coding upstream 1242090 44083085 ~ 44087251 (-)
LOC120570523 NA non-coding downstream 5782 42821613 ~ 42832671 (-)
LOC120553091 NA non-coding downstream 106070 42731419 ~ 42732383 (-)
G23416 NA non-coding downstream 123307 42714932 ~ 42715146 (-)
G23396 NA non-coding downstream 164859 42673188 ~ 42673594 (-)
G23395 NA non-coding downstream 195173 42643070 ~ 42643280 (-)
G23470 NA non-coding upstream 86157 42927152 ~ 42927449 (-)
G23473 NA non-coding upstream 93338 42934333 ~ 42934806 (-)
G23486 NA non-coding upstream 138667 42979662 ~ 42979887 (-)
G23490 NA non-coding upstream 140860 42981855 ~ 42982140 (-)
G23497 NA non-coding upstream 148479 42989474 ~ 42989764 (-)
cntn5 NA other downstream 671416 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 2368277 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 2805297 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 4102630 38727508 ~ 38735823 (-)
robo2 NA other downstream 4189854 38353024 ~ 38648599 (-)
LOC120574039 nlk,nlk2 other upstream 395687 43236682 ~ 43346673 (-)
LOC120553425 NA other upstream 859976 43700971 ~ 43716741 (-)
smco4 NA other upstream 929071 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 1975633 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 4293859 47134854 ~ 47142596 (-)

Expression


Co-expression Network