LOC120573122


Basic Information

Item Value
gene id LOC120573122
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19538375 ~ 19541130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641638.1
GCAGCTATAGCTTCTCCCCATGAAAGCTGCAACCTTCTGCAATGGTGAAGCCAGACTCCTCATCTGATTTAAGAACGCTGTTAAAAACTCATGGGCATCctgaacatacagacacacagatttgATTTGATGCACGGACAAGAAAAAATCAGCAGGCAGCAAAACATTTAATGAGTATGTTTGTACAGATTTACTCACCCAAACCGGGAGGGATGAAGAACCTTGAGGCTCTGTGGCTTGACGGCACCCTGTCTCTGGCAAATGATCTTTTCTACTGCGTCTTCGAGTAAGGAGGAAAAAACAGCGTGCTTAGGCACTGTGGCAGCTGCTTTCCTGTTCTCTTCGTTGGCTTTGTCCAGTGCGGCCTCCTCTTCATCGGTGAGCCCTTTAAACTCCACCACTTCGTCATTTTGGATAGAACTGAAACATGGAGGGAGAAACAGGCTGTCATTCtgtatttcatgtattttttcTGCTGATTTGATAATCTAATTGTATTCACTATATGTGGGTCAACATGGTAAACAACagcaaaaccaaaccaaaagtGAGTATATGTCCAGCAGAGATAATACTGCTCCTCATCAAAATTAATTTCTTGTTCTCAGCGGATGTGATGTAACACGCTGTGAACAGTAGTGTGAGTGTGAAAACAGATCAATACTGTCAACGCATAAGATACTGGTTACCTGCTGATATGTTTCTGCTCAGCTTCATCGTCAGTTACTGGAGCCACACGATGTCTTCTCTGTTAAAGGACAGAAAACTCCAGTGGTTAATTGGTGGAGGTGCTGTGGTGGTTGCTGGACCACCTGAGAAGATgactctgcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacagctggtcaTTCTACTGTTGACTTGAGATTGGAGTGTGGAGAAATCACCTAAAGGGATGAATCCCTCTGTCCTTTGCAGTGTTTTACCAACATTAAAAGGATAAAGACTTGAGTTGACAATGAGGATTTCCTTACCTCTTCACAATCACTGACAGACTTTTAACTTTGCTCTGTAgagtaaaaacaaaagcaatGTCTATGTCAAGCATCTTTTGTGTCCAAAAACCCATTTTACAAAATTCTCAAATCTTGGTGTAAAACGCTGTTACTTCCTGTGAAACTCACTAGGGGTCGACAGAACTGTCTGTACCACCTCCTGTCGCAGTTATCCGCAGAGGTCTTGGCGGCAGGCGCTTCTGAGACGGTGACTCTGGTGATGCACAGAAACACATAGTCTATTATACATCCAAAATCAATCATTTAGGGGCATTAAAAACTCTGTCACAGTTGTCACAGACTTCAACCATGGCTCTAAACAAATCAAGAACCATTGTTATGAGACCATGACATATAATCCAGAAGCTAAAAGAACTAACATGTTTCCCAACACTATTCTCTTTCAAACTTACACCAAACATAAGATACGGTATTCACTTGTACATGCATTTAAGAACAATTGGCAAAAGGTAACTTGAAGTGTGGCAAATGTGCCATTTGCCTACATAATCATCAGATTAATCAATAGCAAGAAAGAGTTAATACTGATGATCAAGTCTTCAAAAACAAATTACTAGTCATAGTGCATGTCTCTGAGGTCACTGACTTTTACAATGaaacaacatttaaatattttctttttaaagtaaattgatgagaaaacagaaaaacttGTATGATGTCATGAACAGTCCTATAATAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641638.1 True 1785 lncRNA 0.41 3 19538375 19541130

Neighbor

gene id symbol gene type direction distance location
dmac2 atp5sl,LOC102790974 coding downstream 1834 19533110 ~ 19536541 (-)
sirt2 sirt2 coding downstream 5724 19525721 ~ 19532651 (-)
rinl NA coding downstream 12794 19515263 ~ 19525581 (-)
LOC120548698 NA coding downstream 70467 19466663 ~ 19467908 (-)
her8.2 LOC100691593,LOC105923939 coding downstream 98235 19438240 ~ 19440140 (-)
LOC120548388 LOC104927217,LOC101068162,LOC100693448,LOC106522132,LOC103364869,LOC101175254,LOC102216590 coding upstream 23088 19564218 ~ 19595131 (-)
nop53 NA coding upstream 57020 19598150 ~ 19609021 (-)
LOC120552636 LOC107395012,LOC103364872,LOC101485936 coding upstream 92363 19633493 ~ 19637402 (-)
psma6l LOC107094495,LOC106935416,LOC103474855,LOC103155941,LOC100701743,LOC106914191,LOC102789735 coding upstream 108911 19650041 ~ 19653824 (-)
LOC120545125 LOC106935408,LOC103155939,LOC106914189,LOC103474854,LOC102218288 coding upstream 122128 19663258 ~ 19670571 (-)
G18127 NA non-coding downstream 133014 19383403 ~ 19405361 (-)
G18002 NA non-coding downstream 303918 19230919 ~ 19234457 (-)
G17986 NA non-coding downstream 383124 19154962 ~ 19155251 (-)
G17964 NA non-coding downstream 788974 18749198 ~ 18749401 (-)
G17936 NA non-coding downstream 944702 18592975 ~ 18593673 (-)
G18179 NA non-coding upstream 84273 19625403 ~ 19628640 (-)
G18184 NA non-coding upstream 108086 19649216 ~ 19649652 (-)
LOC120548779 coq8b,LOC103364879,LOC107395920,LOC108247334 non-coding upstream 213757 19754887 ~ 19755993 (-)
G18216 NA non-coding upstream 310774 19851904 ~ 19856310 (-)
G18329 cep164 non-coding upstream 512090 20053220 ~ 20054134 (-)
LOC120545639 eif4g1 other downstream 1315482 18179013 ~ 18222893 (-)
zgc:165508 fam131a,LOC102799247 other downstream 1386407 18127466 ~ 18151968 (-)
LOC120552194 NA other downstream 1647714 17799999 ~ 17890661 (-)
xaf1 LOC107094331 other downstream 2059472 17472947 ~ 17478903 (-)
G17597 NA other downstream 2607381 16848161 ~ 16930994 (-)
fbxo46 fbxo46,LOC102786997 other upstream 160097 19701227 ~ 19717307 (-)
si:ch211-11n16.2 LOC104927205,LOC101481481,LOC100694251,LOC103369702,LOC107094496 other upstream 259621 19800751 ~ 19810130 (-)
LOC120547993 NA other upstream 595942 20137072 ~ 20141538 (-)
si:ch1073-340i21.1 NA other upstream 1553047 21094177 ~ 21097201 (-)
slc6a4a slc6a4,LOC103359260,LOC108228506 other upstream 1696058 21237188 ~ 21261923 (-)

Expression


Co-expression Network