Fish Transcriptome and Expression Database

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model fish

XLOC_004791 (AL732488.1)

Basic Information

Item	Value
gene id	XLOC_004791
gene name	AL732488.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	29013573 ~ 29013690 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009467
cactacagccatatcaccctgcagcccaagaccagtttcTCACTAAAGTTTagcagggctgagtctggtcagtacctggatgggagaccagaagtggtgttagtgagggcagcagggg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085246

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00009467	True	118	rRNA	0.54	1	29013573	29013690

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004790	valopb	coding	upstream	681	28995942 ~ 29012892 (+)
XLOC_004789	si:rp71-1c10.8	coding	upstream	25215	28986308 ~ 28988358 (+)
XLOC_004788	si:rp71-1c10.10	coding	upstream	50097	28962590 ~ 28963476 (+)
XLOC_004787	znf668	coding	upstream	52940	28955766 ~ 28960633 (+)
XLOC_004786	NA	coding	upstream	67423	28933524 ~ 28946150 (+)
XLOC_004792	gabrz	coding	downstream	41217	29054907 ~ 29105525 (+)
XLOC_004793	adgra1a	coding	downstream	117999	29131689 ~ 29211598 (+)
XLOC_004794	mxtx2	coding	downstream	222584	29236274 ~ 29237815 (+)
XLOC_004795	bms1	coding	downstream	226434	29240124 ~ 29270362 (+)
XLOC_004796	NA	coding	downstream	298875	29312565 ~ 29373414 (+)
XLOC_004779	NA	non-coding	upstream	395608	28617701 ~ 28617965 (+)
XLOC_004777	NA	non-coding	upstream	632318	28377030 ~ 28381255 (+)
XLOC_004762	dre-mir-10a	non-coding	upstream	1878606	27134869 ~ 27134967 (+)
XLOC_004754	BX469896.1	non-coding	upstream	2116957	26894321 ~ 26896616 (+)
XLOC_004797	BX072570.2	non-coding	downstream	418385	29432075 ~ 29432191 (+)
XLOC_004799	BX004794.2	non-coding	downstream	798154	29811844 ~ 29811960 (+)
XLOC_004800	CU464184.2	non-coding	downstream	946250	29959940 ~ 29960054 (+)
XLOC_004801	CU464184.1	non-coding	downstream	956823	29970513 ~ 29970629 (+)

Expression

Co-expression Network