trnaa-ugc_1


Basic Information

Item Value
gene id trnaa-ugc_1
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43530265 ~ 43530337 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_110
GGGGATATAAGCTCAGTTGTAGAGCGCATGCTTTGCATGTATGAGGCCCCGGGTTCAATCCCCGGCATCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_110 True 73 tRNA 0.60 1 43530265 43530337

Neighbor

gene id symbol gene type direction distance location
LOC120553532 NA coding downstream 147052 43381126 ~ 43383213 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding downstream 467020 42992791 ~ 43063245 (-)
LOC120549271 NA coding downstream 619528 42904813 ~ 42910737 (-)
gal3st2 LOC104950586 coding downstream 761699 42739636 ~ 42768566 (-)
fat3a fat3 coding downstream 908305 42393288 ~ 42621960 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding upstream 36243 43566580 ~ 43578411 (-)
omgb omg coding upstream 552748 44083085 ~ 44087251 (-)
LOC120574562 NA coding upstream 564511 44094848 ~ 44098473 (-)
LOC120574575 NA coding upstream 568626 44098963 ~ 44114071 (-)
LOC120551889 NA coding upstream 1207524 44737861 ~ 44739433 (-)
trnag-ucc_2 NA non-coding downstream 811 43529383 ~ 43529454 (-)
trnas-aga_1 NA non-coding downstream 1748 43528436 ~ 43528517 (-)
trnag-ucc_1 NA non-coding downstream 2005 43528189 ~ 43528260 (-)
trnaa-ugc NA non-coding downstream 2340 43527854 ~ 43527925 (-)
G23648 NA non-coding downstream 26467 43430630 ~ 43503798 (-)
trnas-aga_2 NA non-coding upstream 509 43530846 ~ 43530930 (-)
trnag-ucc_3 NA non-coding upstream 1457 43531794 ~ 43531865 (-)
trnaa-ugc_2 NA non-coding upstream 2344 43532681 ~ 43532752 (-)
trnas-aga_3 NA non-coding upstream 2924 43533261 ~ 43533342 (-)
trnag-ucc_4 NA non-coding upstream 3870 43534207 ~ 43534278 (-)
LOC120574039 nlk,nlk2 other downstream 183592 43236682 ~ 43346673 (-)
cntn5 NA other downstream 1363228 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 3060089 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 3497109 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 4794442 38727508 ~ 38735823 (-)
LOC120553425 NA other upstream 170634 43700971 ~ 43716741 (-)
smco4 NA other upstream 239729 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 1286291 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 3604517 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 3765217 47295554 ~ 47325453 (-)

Expression


Co-expression Network