trnas-aga_2


Basic Information

Item Value
gene id trnas-aga_2
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43530846 ~ 43530930 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_111
GGTTGTGCGTGGCCGAGCGGTTAAGGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCGGGTTCAAATCCTGCCGCAACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_111 True 85 tRNA 0.56 1 43530846 43530930

Neighbor

gene id symbol gene type direction distance location
LOC120553532 NA coding downstream 147633 43381126 ~ 43383213 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding downstream 467601 42992791 ~ 43063245 (-)
LOC120549271 NA coding downstream 620109 42904813 ~ 42910737 (-)
gal3st2 LOC104950586 coding downstream 762280 42739636 ~ 42768566 (-)
fat3a fat3 coding downstream 908886 42393288 ~ 42621960 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding upstream 35650 43566580 ~ 43578411 (-)
omgb omg coding upstream 552155 44083085 ~ 44087251 (-)
LOC120574562 NA coding upstream 563918 44094848 ~ 44098473 (-)
LOC120574575 NA coding upstream 568033 44098963 ~ 44114071 (-)
LOC120551889 NA coding upstream 1206931 44737861 ~ 44739433 (-)
trnaa-ugc_1 NA non-coding downstream 509 43530265 ~ 43530337 (-)
trnag-ucc_2 NA non-coding downstream 1392 43529383 ~ 43529454 (-)
trnas-aga_1 NA non-coding downstream 2329 43528436 ~ 43528517 (-)
trnag-ucc_1 NA non-coding downstream 2586 43528189 ~ 43528260 (-)
trnaa-ugc NA non-coding downstream 2921 43527854 ~ 43527925 (-)
trnag-ucc_3 NA non-coding upstream 864 43531794 ~ 43531865 (-)
trnaa-ugc_2 NA non-coding upstream 1751 43532681 ~ 43532752 (-)
trnas-aga_3 NA non-coding upstream 2331 43533261 ~ 43533342 (-)
trnag-ucc_4 NA non-coding upstream 3277 43534207 ~ 43534278 (-)
trnaa-ugc_3 NA non-coding upstream 4166 43535096 ~ 43535166 (-)
LOC120574039 nlk,nlk2 other downstream 184173 43236682 ~ 43346673 (-)
cntn5 NA other downstream 1363809 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 3060670 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 3497690 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 4795023 38727508 ~ 38735823 (-)
LOC120553425 NA other upstream 170041 43700971 ~ 43716741 (-)
smco4 NA other upstream 239136 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 1285698 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 3603924 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 3764624 47295554 ~ 47325453 (-)

Expression


Co-expression Network