trnas-aga_5


Basic Information

Item Value
gene id trnas-aga_5
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43538091 ~ 43538172 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_120
GTTGTcgtggccgagtggttaaggcgatggactAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCAAATCCTGCCGACAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_120 True 82 tRNA 0.56 1 43538091 43538172

Neighbor

gene id symbol gene type direction distance location
LOC120553532 NA coding downstream 154878 43381126 ~ 43383213 (-)
efhd1 efhd1,LOC100691052,LOC101463816,LOC102780618,LOC103377704 coding downstream 474846 42992791 ~ 43063245 (-)
LOC120549271 NA coding downstream 627354 42904813 ~ 42910737 (-)
gal3st2 LOC104950586 coding downstream 769525 42739636 ~ 42768566 (-)
fat3a fat3 coding downstream 916131 42393288 ~ 42621960 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding upstream 28408 43566580 ~ 43578411 (-)
omgb omg coding upstream 544913 44083085 ~ 44087251 (-)
LOC120574562 NA coding upstream 556676 44094848 ~ 44098473 (-)
LOC120574575 NA coding upstream 560791 44098963 ~ 44114071 (-)
LOC120551889 NA coding upstream 1199689 44737861 ~ 44739433 (-)
trnaa-ugc_4 NA non-coding downstream 509 43537511 ~ 43537582 (-)
trnag-ucc_5 NA non-coding downstream 1396 43536624 ~ 43536695 (-)
trnas-aga_4 NA non-coding downstream 2333 43535677 ~ 43535758 (-)
trnaa-ugc_3 NA non-coding downstream 2925 43535096 ~ 43535166 (-)
trnag-ucc_4 NA non-coding downstream 3813 43534207 ~ 43534278 (-)
trnag-ucc_6 NA non-coding upstream 870 43539042 ~ 43539113 (-)
G23690 NA non-coding upstream 59819 43597991 ~ 43598222 (-)
LOC120545612 NA non-coding upstream 130259 43668431 ~ 43669661 (-)
G23706 NA non-coding upstream 131774 43669946 ~ 43670275 (-)
G23728 NA non-coding upstream 172380 43710552 ~ 43711108 (-)
LOC120574039 nlk,nlk2 other downstream 191418 43236682 ~ 43346673 (-)
cntn5 NA other downstream 1371054 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 3067915 40290005 ~ 40470176 (-)
LOC120546248 LOC103363423,LOC101478053,LOC102201911,LOC102303851 other downstream 3504935 39943571 ~ 40033156 (-)
LOC120570635 sel1l3,LOC103353588 other downstream 4802268 38727508 ~ 38735823 (-)
LOC120553425 NA other upstream 162799 43700971 ~ 43716741 (-)
smco4 NA other upstream 231894 43770066 ~ 43789435 (-)
mrps23 mrps23 other upstream 1278456 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 3596682 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 3757382 47295554 ~ 47325453 (-)

Expression


Co-expression Network