snrpd1 (snrpd1,LOC107655105,LOC107559756)


Basic Information

Item Value
gene id snrpd1
gene name snrpd1,LOC107655105,LOC107559756
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 17886458 ~ 17893429 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU180868
CGCGACTGAAACGTAAAACCTACAACAGCGGCCTGTGTTTTCACTCGAGCGCTGTAATTTTTTGTCTTTGGTGGAGGATTTGTCTCTACAGTCCGTCACCATCATGAAACTTGTCAGGTTTTTGATGAAACTCAGCCATGAGACGGTTACCATTGAACTAAAGAATGGCACCCAGGTCCATGGCACCATTACAGGTGTTGATGTGAGCATGAACACCCACCTGAAAGCGGTGAAAATGACCCTGAAAAACAGGGAGCCCACTCAGCTGGAATCACTAAGTATCCGTGGCAACAATATTCGCTACTTTATCCTTCCTGACAGCCTCCCACTGGACACCTTGCTGGTTGACATCGAGCCAAAGGTCAAGTCCAAGAAGAGAGAAGCAGTGGCTGGACGGGGACGAGGCAGGGGACGAGGCCGTGGCAGAGGAAGGGGACGAGGTCGGGGTGGCCCGAGGAGATGATCACCAGGTCGTACATTTGCAGGCCACCACCCCACTGTTTGTACaggatttttttctttgctcagaggaaacattttgtgaatttccatgtgttttcagttttgttttttcattattttgtacATTAAAATGGATAGAGGTAAAAAGGAA
>XM_039821197.1
CTCATTTAATGACGTCGTATCAGCGCGACTGAAACGTAAAACCTACAACAGCGGCCTGTGTTTTCACTCGAGCGCTGTAATTTTTTGTCTTTGGTGGAGGATTTGTCTCTACAGTCCGTCACCATCATGAAACTTGTCAGGTTTTTGATGAAACTCAGCCATGAGACGGTTACCATTGAACTAAAGAATGGCACCCAGGTCCATGGCACCATTACAGGTGTTGATGTGAGCATGAACACCCACCTGAAAGCGGTGAAAATGACCCTGAAAAACAGGGAGCCCACTCAGCTGGAATCACTAAGTATCCGTGGCAACAATATTCGCTACTTTATCCTTCCTGACAGCCTCCCACTGGACACCTTGCTGGTTGACATCGAGCCAAAGGTCAAGTCCAAGAAGAGAGAAGCAGTGGCTGGACGGGGACGAGGCAGGGGACGAGGCCGTGGCAGAGGAAGGGGACGAGGTCGGGGTGGCCCGAGGAGATGATCACCAGGTCGTACATTTGCAGGCCACCACCCCACTGTTTGTACaggatttttttctttgctcagaggaaacattttgtgaatttccatgtgttttcagttttgttttttcattattttgtacATTAAAATGGATAGAGGTAAAAAGGAA

Function

symbol description
snrpd1 Predicted to enable RNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide).

NR:

description
PREDICTED: small nuclear ribonucleoprotein Sm D1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K11087 SNRPD1, SMD1; small nuclear ribonucleoprotein D1

RNA

RNA id representative length rna type GC content exon number start site end site
TU180868 False 613 TUCP 0.48 4 17886458 17893406
XM_039821197.1 True 636 mRNA 0.47 4 17886458 17893429

Neighbor

gene id symbol gene type direction distance location
ggcta ggct,LOC103376332 coding downstream 3023 17880974 ~ 17883435 (-)
atp6v1c1b LOC103376360,LOC100703061,LOC104937165,LOC102207943,LOC102305030 coding downstream 31027 17843189 ~ 17855431 (-)
spire1a NA coding downstream 49828 17800253 ~ 17836630 (-)
fam91a1 fam91a1,LOC102789578 coding downstream 98976 17764541 ~ 17787482 (-)
lratd2a LOC104923110,LOC103376397,LOC104966619,LOC100702527,LOC102789288,LOC102205036 coding downstream 125065 17759513 ~ 17761393 (-)
LOC120571821 LOC103376316 coding upstream 1275 17894704 ~ 17916290 (-)
LOC120570901 NA coding upstream 23591 17917020 ~ 17919764 (-)
grinaa grina,LOC106588904 coding upstream 51967 17945396 ~ 17959992 (-)
mapk15 mapk15 coding upstream 67549 17960978 ~ 17971436 (-)
vps28 vps28,LOC102796641 coding upstream 78692 17972121 ~ 17977552 (-)
G134338 NA non-coding downstream 95843 17790395 ~ 17790615 (-)
G134326 NA non-coding downstream 127110 17758857 ~ 17759348 (-)
G134316 NA non-coding downstream 148383 17737815 ~ 17738075 (-)
G134315 LOC104966617,LOC106515792,LOC103394448,LOC103376406 non-coding downstream 158904 17724737 ~ 17727554 (-)
G134300 NA non-coding downstream 266890 17619358 ~ 17619568 (-)
G134495 NA non-coding upstream 159816 18053245 ~ 18053712 (-)
G134499 NA non-coding upstream 172887 18066316 ~ 18066602 (-)
G134528 NA non-coding upstream 181618 18075047 ~ 18076431 (-)
G134535 NA non-coding upstream 220776 18114205 ~ 18114432 (-)
LOC120571945 NA non-coding upstream 259041 18152470 ~ 18156123 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 44224 17837572 ~ 17842234 (-)
triqk triqk other downstream 295075 17568549 ~ 17591383 (-)
sesn2 sesn2,LOC104943519 other downstream 1167515 16708842 ~ 16718943 (-)
wasf2 wasf2 other downstream 1226334 16649677 ~ 16660124 (-)
G133918 NA other downstream 1355648 16528824 ~ 16530810 (-)
si:ch211-199g17.9 LOC104947036 other upstream 45363 17938792 ~ 17944474 (-)
LOC120572101 NA other upstream 48539 17941968 ~ 17942100 (-)
rbm24a rbm24 other upstream 112699 18006128 ~ 18017028 (-)
G134893 LOC104963956 other upstream 1570916 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1630749 19524178 ~ 19690006 (-)

Expression


Co-expression Network