si:ch211-199g17.9 (LOC104947036)


Basic Information

Item Value
gene id si:ch211-199g17.9
gene name LOC104947036
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 17938792 ~ 17944474 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU180882
GTGGAAATCTTTTATATTTCAATATGTTTTTATCTTGTATTGAgtgagttgtgtgtgttgtgcaggCATTTAAAGCAGAACAAGAAAAGTGAGGAACTGCTGGAAGAGTACAGATGTGAAATCCAGGAATTCAAGCTTAAACACCGGAAGCAGCGGATGAAGTTTGAAAACCAACTTCATCAGCTGATAGAGCAGCACAAGAATCTGCACTCTGTCTTTACTCCAGAAAGGCTCCCAGAAGAAATAGAGAGTGCTGGGAATACGAAAAGTCAGCTGTTATCAGCTGAACAAATTAAGTTGGCTCAGCTGCACCGCCTCGATGAGGAGCTAGAAGAGATGAAGAAACAGAAGCAGccagtgacaacagctgcagaGACTCAGGAGGAGTAAAACTGTTCGTAGGTCATTTTAAAGAATCAGAGGTAACAGTCTCTTGTTTTATTTCCAGTTAGATGCACTTTGATCACTTCTTGTCAAGTGAAAACCTTAAATCTCACAAATGGCAGCTTCTGGGTTTCATCAGTCCAGGTGTTTCAGGATCCTTCCTAACATGTACAGCAAAAAACTGAAACTTTAGTtgaccaaaaataaaaatgtacacagAATTTTAGTCACAACTTCAACTACAATTTATACCAGTGACATCCAAGTAAAATTTTTGCCTACCAAACTCTGTTAATTCCTGTGTCCTTGGCTACTTTTCTGTAAGTACTTCATGCATTTACATTCACTCTTCTGTAAGGCATGGGTTTGTTTTGATGTATTTATGAAAccagaaatattttacattgtTACTGGTAAATGGTGTTTTTCAAGTGCCTG
>TU180883
GTCAGAAATTCAACTGGTGGTAGCTAACCTAGCGAAAGCAGCATGTGGAGTtaacatcttgacatgttagtTAGTCTTTGTGAAGCTACACTTCCACTTCCGATGGTAAAAGAGCCCTGGAAGAAGAAATTAAGGAATTCAAATCTGTCAGTGACTCTTTGCAGAAAGAGCTGGAAACTttacAAACTGAAGCTTACCAACTGGAAGGAATccataaagaaaaagaagAGTTGTGCAGGAAGCTGCAGTTCCAGTGTGAGGAGTCTGAACAGGACTGTTCCAGgCATTTAAAGCAGAACAAGAAAAGTGAGGAACTGCTGGAAGAGTACAGATGTGAAATCCAGGAATTCAAGCTTAAACACCGGAAGCAGCGGATGAAGTTTGAAAACCAACTTCATCAGCTGATAGAGCAGCACAAGAATCTGCACTCTGTCTTTACTCCAGAAAGGCTCCCAGAAGAAATAGAGAGTGCTGGGAATACGAAAAGTCAGCTGTTATCAGCTGAACAAATTAAGTTGGCTCAGCTGCACCGCCTCGATGAGGAGCTAGAAGAGATGAAGAAACAGAAGCAGccagtgacaacagctgcagaGACTCAGGAGGAGTAAAACTGTTCGTAGGTCATTTTAAAGAATCAGAGGTAACAGTCTCTTGTTTTATTTCCAGTTAGATGCACTTTGATCACTTCTTGTCAAGTGAAAACCTTAAATCTCACAAATGGCAGCTTCTGGGTTTCATCAGTCCAGGTGTTTCAGGATCCTTCCTAACATGTACAGCAAAAAACTGAAACTTTAGTtgaccaaaaataaaaatgtacacagAATTTTAGTCACAACTTCAACTACAATTTATACCAGTGACATCCAAGTAAAATTTTTGCCTACCAAACTCTGTTAATTCCTGTGTCCTTGGCTACTTTTCTGTAAGTACTTCATGCATTTACATTCACTCTTCTGTAAGGCATGGGTTTGTTTTGATGTATTTATGAAAccagaaatattttacattgtTACTGGTAAATGGTGTTTTTCAAGTGCCTG
>XM_039819546.1
AGACGCACTGTGGCGCCAAACGGGTTCTGGTTCCGTTCTCGTGCACATATAGGTGCACACGTCCCTTGAGATAAGGACCGTTAGGACTCTGGATAGTGAAGAAAAGACTCTTCTGGCTGGATAACATGAGCGAATTGGCAGGATTCAACATTGAGGACTTGATTAATGTTACACCAATGAATGGAGGTGGAGGAATGCAGCAGGAGCCCAAAGTTGAACAGTTGATGGGCAAATTAAGAAGGCTGCAACAAGGTAAAAGAGCCCTGGAAGAAGAAATTAAGGAATTCAAATCTGTCAGTGACTCTTTGCAGAAAGAGCTGGAAACTttacAAACTGAAGCTTACCAACTGGAAGGAATccataaagaaaaagaagAGTTGTGCAGGAAGCTGCAGTTCCAGTGTGAGGAGTCTGAACAGGACTGTTCCAGgCATTTAAAGCAGAACAAGAAAAGTGAGGAACTGCTGGAAGAGTACAGATGTGAAATCCAGGAATTCAAGCTTAAACACCGGAAGCAGCGGATGAAGTTTGAAAACCAACTTCATCAGCTGATAGAGCAGCACAAGAATCTGCACTCTGTCTTTACTCCAGAAAGGCTCCCAGAAGAAATAGAGAGTGCTGGGAATACGAAAAGTCAGCTGTTATCAGCTGAACAAATTAAGTTGGCTCAGCTGCACCGCCTCGATGAGGAGCTAGAAGAGATGAAGAAACAGAAGCAGccagtgacaacagctgcagaGACTCAGGAGGAGTAAAACTGTTCGTAGGTCATTTTAAAGAATCAGAGGTAACAGTCTCTTGTTTTATTTCCAGTTAGATGCACTTTGATCACTTCTTGTCAAGTGAAAACCTTAAATCTCACAAATGGCAGCTTCTGGGTTTCATCAGTCCAGGTGTTTCAGGATCCTTCCTAACATGTACAGCAAAAAACTGAAACTTTAGTtgaccaaaaataaaaatgtacacagAATTTTAGTCACAACTTCAACTACAATTTATACCAGTGACATCCAAGTAAAATTTTTGCCTACCAAACTCTGTTAATTCCTGTGTCCTTGGCTACTTTTCTGTAAGTACTTCATGCATTTACATTCACTCTTCTGTAAGGCATGGGTTTGTTTTGATGTATTTATGAAAccagaaatattttacattgtTACTGGTAAATGGTGTTTTTCAAGTGCCTGTAGTAGTATCCTGTATGGTACTATGATCTTActtaaatattgaaatattgtGTATTGACATAATATAAAGGTGTTCatatatctaaaataaaataaagttttttaacAA
>XM_039819547.1
GTCTACAAAGACATGGCTTAATGATTCAACATTGAGGACTTGATTAATGTTACACCAATGAATGGAGGTGGAGGAATGCAGCAGGAGCCCAAAGTTGAACAGTTGATGGGCAAATTAAGAAGGCTGCAACAAGGTAAAAGAGCCCTGGAAGAAGAAATTAAGGAATTCAAATCTGTCAGTGACTCTTTGCAGAAAGAGCTGGAAACTttacAAACTGAAGCTTACCAACTGGAAGGAATccataaagaaaaagaagAGTTGTGCAGGAAGCTGCAGTTCCAGTGTGAGGAGTCTGAACAGGACTGTTCCAGgCATTTAAAGCAGAACAAGAAAAGTGAGGAACTGCTGGAAGAGTACAGATGTGAAATCCAGGAATTCAAGCTTAAACACCGGAAGCAGCGGATGAAGTTTGAAAACCAACTTCATCAGCTGATAGAGCAGCACAAGAATCTGCACTCTGTCTTTACTCCAGAAAGGCTCCCAGAAGAAATAGAGAGTGCTGGGAATACGAAAAGTCAGCTGTTATCAGCTGAACAAATTAAGTTGGCTCAGCTGCACCGCCTCGATGAGGAGCTAGAAGAGATGAAGAAACAGAAGCAGccagtgacaacagctgcagaGACTCAGGAGGAGTAAAACTGTTCGTAGGTCATTTTAAAGAATCAGAGGTAACAGTCTCTTGTTTTATTTCCAGTTAGATGCACTTTGATCACTTCTTGTCAAGTGAAAACCTTAAATCTCACAAATGGCAGCTTCTGGGTTTCATCAGTCCAGGTGTTTCAGGATCCTTCCTAACATGTACAGCAAAAAACTGAAACTTTAGTtgaccaaaaataaaaatgtacacagAATTTTAGTCACAACTTCAACTACAATTTATACCAGTGACATCCAAGTAAAATTTTTGCCTACCAAACTCTGTTAATTCCTGTGTCCTTGGCTACTTTTCTGTAAGTACTTCATGCATTTACATTCACTCTTCTGTAAGGCATGGGTTTGTTTTGATGTATTTATGAAAccagaaatattttacattgtTACTGGTAAATGGTGTTTTTCAAGTGCCTGTAGTAGTATCCTGTATGGTACTATGATCTTActtaaatattgaaatattgtGTATTGACATAATATAAAGGTGTTCatatatctaaaataaaataaagttttttaacAA

Function

NR:

description
synaptonemal complex central element protein 1

GO: NA

KEGG:

id description
K19534 SYCE1; synaptonemal complex central element protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU180882 False 822 lncRNA 0.39 4 17938901 17940325
TU180883 False 1040 lncRNA 0.40 8 17938901 17942615
XM_039819546.1 True 1296 mRNA 0.40 10 17938792 17944474
XM_039819547.1 False 1177 mRNA 0.38 10 17938792 17944131

Neighbor

gene id symbol gene type direction distance location
LOC120570901 NA coding downstream 19028 17917020 ~ 17919764 (-)
LOC120571821 LOC103376316 coding downstream 22502 17894704 ~ 17916290 (-)
ggcta ggct,LOC103376332 coding downstream 55357 17880974 ~ 17883435 (-)
atp6v1c1b LOC103376360,LOC100703061,LOC104937165,LOC102207943,LOC102305030 coding downstream 83361 17843189 ~ 17855431 (-)
spire1a NA coding downstream 102162 17800253 ~ 17836630 (-)
grinaa grina,LOC106588904 coding upstream 922 17945396 ~ 17959992 (-)
mapk15 mapk15 coding upstream 16504 17960978 ~ 17971436 (-)
vps28 vps28,LOC102796641 coding upstream 27647 17972121 ~ 17977552 (-)
cap2 cap2 coding upstream 35960 17980434 ~ 18003842 (-)
stmnd1 NA coding upstream 74287 18018761 ~ 18022270 (-)
G134338 NA non-coding downstream 148177 17790395 ~ 17790615 (-)
G134326 NA non-coding downstream 179444 17758857 ~ 17759348 (-)
G134316 NA non-coding downstream 200717 17737815 ~ 17738075 (-)
G134315 LOC104966617,LOC106515792,LOC103394448,LOC103376406 non-coding downstream 211238 17724737 ~ 17727554 (-)
G134300 NA non-coding downstream 319224 17619358 ~ 17619568 (-)
G134495 NA non-coding upstream 108771 18053245 ~ 18053712 (-)
G134499 NA non-coding upstream 121842 18066316 ~ 18066602 (-)
G134528 NA non-coding upstream 130573 18075047 ~ 18076431 (-)
G134535 NA non-coding upstream 169731 18114205 ~ 18114432 (-)
LOC120571945 NA non-coding upstream 207996 18152470 ~ 18156123 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 45363 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 96558 17837572 ~ 17842234 (-)
triqk triqk other downstream 347409 17568549 ~ 17591383 (-)
sesn2 sesn2,LOC104943519 other downstream 1219849 16708842 ~ 16718943 (-)
wasf2 wasf2 other downstream 1278668 16649677 ~ 16660124 (-)
rbm24a rbm24 other upstream 61654 18006128 ~ 18017028 (-)
G134893 LOC104963956 other upstream 1519871 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1579704 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1748581 19693055 ~ 20076540 (-)
G134942 NA other upstream 2293910 20238384 ~ 20239260 (-)

Expression


Co-expression Network