rbm24a (rbm24)


Basic Information

Item Value
gene id rbm24a
gene name rbm24
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 18006128 ~ 18017028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU180947
GGGCCTGTAAGGACCCCAACCCAATCATTGACGGCAGGAAGGCCAACGTCAACCTGGCCTACCTGGGGGCCAAGCCTCGGGTGATGCAGCCAGGTTTTACTTTTGGTGTTCCCCAAATTCATCCTGCGTTCATCCAAAGGCCTTATGGGCTCGCTCTCGGTTAAGCTAACTGTGCTGGTTTGTGGAATAGTTCTGCGAACGTAATCACAGATCAGAGAAAGGAATTACCTGTAgactcaaacaaacacaaacaagctCTCAAAATGCATCCCGGCCCACTACGTGTACCCTCAGGCCTTCGTTCAGCCCAGTGTGGTCATCCCTCATGTGCAACCTACAGCTGCTGCACCTGCCACCGCTTCCTCCCCCTACATCGACTACACCGGAGCTGCCTACGCGCAGTATTCTGCAGCCGCAGCCAACGCTGCCGCTGCATATGAGCAGTATCCCTACGCTGCATCCCCTGCCGCCGCAGGCTACTTAGCTACTGCCGGCTACGGCTATGCAGTCCAGCAGCCTTtagccacagctgccccaggctCAGCCGCCGCTGCAGCAGCAGCCTTTGGTCAGTACCAGCCTCAGCAGCTGCAAGCCGACCGCATGCAATAGCAGCCACTGCAACCACTGGACATGCAGAGAGAGGAGGCCTGCACCCGGCCACAGCTGATTAGTCAGAAGGAGCAGCGAAGGAAAAGGAAGAGGGAGTGGCCTTAAGGGTGGGTGTGTCAGCAACTTAGAGGCAGAGTTGCTTTAAaaaagtgatgatgatgatgatggtggtggtggtagtgatgatgatgatgatgatgatggtggtggtagtGATAATGATGGTGAGGTGGGAACCTTTTACAGTAACTTTCCAACTTGCTGTGCTTCAACCAAAAAacgagaaaatgaaaaaaagtcgcAGAACAAATAATGGAAAGTGATAtactattattgttgttgttattactattattattattattattattattattattatcattactaTTATCATTGTAGTAGAGTACTTATTTCTAGAGAAGAAAAGCAGGAACTAATCCCTGTGGTTGGTATAGGTGTTAAACTAAGCCTTTAAGTCCTATTGCTGTCTTTAACGTTAGTTTAGGAgactgttctcttttttttcagttatttgaTGCCCtcataacatttatatttattattgttattattacacattgGGGGCTCTTcttgttctttttgtcttttcaagTGCAGTTTTTGAGTTAATATTTTCTGATAATCAGGGAAATGGAACCGTTTCCAACGTGTTAGCTATTATTATGTGACCTCTGTCGGGAAGTCGAGGAGTCGTAACTTGTCGTGTCACACATATTTGAAGAACTACCTTTTTATCTTCCTGATGCTGAATGTCCCTTTTTTACATTATGTCTTGACCTCTTGACCTATGCAAACAAATCACCAggagacaaaaaacaacaaagaaaagaaactgaAAATGTCATCAACTCTGACTTGATTCTTGGACTAAAGGGGGACTtggcaaacaaaacaaacgCACTGACAAAAGGAAAGAGGTTGAAAATGGCTTCAGACAATGAGAAACACTAAATCAGTCCCTTTTCCACATGTTTCAcctacacagacacatgcatccAGAGTTGCACACATAGCAGTCAAAGACAAAGGCAGCACAGTTGTGTTTCTCTCTGGCTCTgggatggagagaaagaaaaagagaaagaaagagggagagagcagcTGCTGGTGGGGGTGGACAGAGCCGCTCCAGCGCCACACAGACGGATCACTCTGGAAAGAACGCATCACTTGTGCTCGTTTGTTGAGCTGTCACATTTTAATCCCTGGCCAGGCCCATTTGGGAACCAACTTCACACCCCTACACCCAACTCAACAGGGTAACAGAGCCCCACAGCAgagcccccaccccccccagtCATGCAGCCCTGCAGCTGTCAGCACTTCCACCTCCGTGCTGCTGTAGTCTGGTGTCAGgtacacactcacaaacacacacactttcaaccaAAGCCACCCCAACAACTGGTCTGCCTCATGTCTGTCAAAATCACCAGGTGGGGTGGGAGAGAACGGGGGTTTGACTCTTTGACGTAATGTTGGTCTGTGTGCCTAGATTTTTACTGCTatttaagtgaaaaaaaaacagaaaaaagagaattctactatttaagatatttatttttGGGGGTTGACTATGTTGACGCTCTGAGAGTAGAGACTTAGTGGCGGTActgtattaataatattatgtACTCATCTCAAGGCATATATAAGTTATTGATTAGTTTTAGTAATAATAGaactaaaataattattattattaacatacTCAACCAAAAATGTCGATGTAGGAGTTATTTAAGATACTGTTATGTgcactgtacttttttttttttatcttttcgaTTCTTTAGAACATGACATGAAATATTAGCTCAATGCCTTTTGTAGGGaagaaactttatttaaatgcaGGCCTGTTTGCATGCAGATTGTACTCTGCCTCTTCTGTGTTCAGATGAGAGGAtacagtaaaaataataatttcacaaaaaacaagcaaaaatgcTGCTTTCTCCACTAGAATGTATAGTTGTCGTCAAGGTTTCAGTAGCTGTGCTTCTTTTGCTTAATATTCATCAGATGGGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAAgggaaatatgaaaaaaaaatgacaaaaaaactttttaagaaAGCTTTTCATTGTCACTGGATGAAGGcatgtaaaatgtttctatTTAATGCAAAGGTCCTGTTTATATTAAAACCTTTACTTCAGAATTTCAA
>TU180948
AGTTACCAAGAAGAGCTGGAAACACCTGATGGTCTCTGTGGGACAATCCGCTCCATATAACTCTCCTCTTAAGTGTCGGAAGATAAATCTACCTCCAGGCTTACTTTTTGTCAAGTTTTCgttgtgttttctcttctgAAAAAGTTACAGAGCCAGCTTATCTCTCGTTCCTTCTCTTCATCCAAAGAATTACTGATAAGGAGACATTgcactattcttttttttttattgttgctatttattgtattttgcacTAACGATGCACACCACGCAAAAGGACACGACCTATACGAAGATTTTTGTCGGGGGTCTCCCCTACCACACCACGGATTCAAGTCTCAGGAAATATTTTGAGGTGTTTGGTGAGATCGAAGAAGCGGTAGTCATTACCGACAGACAGACCGGCAAGTCTAGGGGTTATGGATTCGT
>XM_039820916.1
TGAAAGCTGGGTGGAGTTAGGAGCAGCGCTTTTAGGAATGGGTCCCAAACCTATTTAGTTAGACAGCAGAGTTACCAAGAAGAGCTGGAAACACCTGATGGTCTCTGTGGGACAATCCGCTCCATATAACTCTCCTCTTAAGTGTCGGAAGATAAATCTACCTCCAGGCTTACTTTTTGTCAAGTTTTCgttgtgttttctcttctgAAAAAGTTACAGAGCCAGCTTATCTCTCGTTCCTTCTCTTCATCCAAAGAATTACTGATAAGGAGACATTgcactattcttttttttttattgttgctatttattgtattttgcacTAACGATGCACACCACGCAAAAGGACACGACCTATACGAAGATTTTTGTCGGGGGTCTCCCCTACCACACCACGGATTCAAGTCTCAGGAAATATTTTGAGGTGTTTGGTGAGATCGAAGAAGCGGTAGTCATTACCGACAGACAGACCGGCAAGTCTAGGGGTTATGGATTCGTAAGCTACAGACCCGGGGCCTGTAAGGACCCCAACCCAATCATTGACGGCAGGAAGGCCAACGTCAACCTGGCCTACCTGGGGGCCAAGCCTCGGGTGATGCAGCCAGGTTTTACTTTTGGTGTTCCCCAAATTCATCCTGCGTTCATCCAAAGGCCTTATGGCATCCCGGCCCACTACGTGTACCCTCAGGCCTTCGTTCAGCCCAGTGTGGTCATCCCTCATGTGCAACCTACAGCTGCTGCACCTGCCACCGCTTCCTCCCCCTACATCGACTACACCGGAGCTGCCTACGCGCAGTATTCTGCAGCCGCAGCCAACGCTGCCGCTGCATATGAGCAGTATCCCTACGCTGCATCCCCTGCCGCCGCAGGCTACTTAGCTACTGCCGGCTACGGCTATGCAGTCCAGCAGCCTTtagccacagctgccccaggctCAGCCGCCGCTGCAGCAGCAGCCTTTGGTCAGTACCAGCCTCAGCAGCTGCAAGCCGACCGCATGCAATAGCAGCCACTGCAACCACTGGACATGCAGAGAGAGGAGGCCTGCACCCGGCCACAGCTGATTAGTCAGAAGGAGCAGCGAAGGAAAAGGAAGAGGGAGTGGCCTTAAGGGTGGGTGTGTCAGCAACTTAGAGGCAGAGTTGCTTTAAaaaagtgatgatgatgatgatggtggtggtggtagtgatgatgatgatgatgatgatggtggtggtagtGATAATGATGGTGAGGTGGGAACCTTTTACAGTAACTTTCCAACTTGCTGTGCTTCAACCAAAAAacgagaaaatgaaaaaaagtcgcAGAACAAATAATGGAAAGTGATAtactattattgttgttgttattactattattattattattattattattattattatcattactaTTATCATTGTAGTAGAGTACTTATTTCTAGAGAAGAAAAGCAGGAACTAATCCCTGTGGTTGGTATAGGTGTTAAACTAAGCCTTTAAGTCCTATTGCTGTCTTTAACGTTAGTTTAGGAgactgttctcttttttttcagttatttgaTGCCCtcataacatttatatttattattgttattattacacattgGGGGCTCTTcttgttctttttgtcttttcaagTGCAGTTTTTGAGTTAATATTTTCTGATAATCAGGGAAATGGAACCGTTTCCAACGTGTTAGCTATTATTATGTGACCTCTGTCGGGAAGTCGAGGAGTCGTAACTTGTCGTGTCACACATATTTGAAGAACTACCTTTTTATCTTCCTGATGCTGAATGTCCCTTTTTTACATTATGTCTTGACCTCTTGACCTATGCAAACAAATCACCAggagacaaaaaacaacaaagaaaagaaactgaAAATGTCATCAACTCTGACTTGATTCTTGGACTAAAGGGGGACTtggcaaacaaaacaaacgCACTGACAAAAGGAAAGAGGTTGAAAATGGCTTCAGACAATGAGAAACACTAAATCAGTCCCTTTTCCACATGTTTCAcctacacagacacatgcatccAGAGTTGCACACATAGCAGTCAAAGACAAAGGCAGCACAGTTGTGTTTCTCTCTGGCTCTgggatggagagaaagaaaaagagaaagaaagagggagagagcagcTGCTGGTGGGGGTGGACAGAGCCGCTCCAGCGCCACACAGACGGATCACTCTGGAAAGAACGCATCACTTGTGCTCGTTTGTTGAGCTGTCACATTTTAATCCCTGGCCAGGCCCATTTGGGAACCAACTTCACACCCCTACACCCAACTCAACAGGGTAACAGAGCCCCACAGCAgagcccccaccccccccagtCATGCAGCCCTGCAGCTGTCAGCACTTCCACCTCCGTGCTGCTGTAGTCTGGTGTCAGgtacacactcacaaacacacacactttcaaccaAAGCCACCCCAACAACTGGTCTGCCTCATGTCTGTCAAAATCACCAGGTGGGGTGGGAGAGAACGGGGGTTTGACTCTTTGACGTAATGTTGGTCTGTGTGCCTAGATTTTTACTGCTatttaagtgaaaaaaaaacagaaaaaagagaattctactatttaagatatttatttttGGGGGTTGACTATGTTGACGCTCTGAGAGTAGAGACTTAGTGGCGGTActgtattaataatattatgtACTCATCTCAAGGCATATATAAGTTATTGATTAGTTTTAGTAATAATAGaactaaaataattattattattaacatacTCAACCAAAAATGTCGATGTAGGAGTTATTTAAGATACTGTTATGTgcactgtacttttttttttttatcttttcgaTTCTTTAGAACATGACATGAAATATTAGCTCAATGCCTTTTGTAGGGaagaaactttatttaaatgcaGGCCTGTTTGCATGCAGATTGTACTCTGCCTCTTCTGTGTTCAGATGAGAGGAtacagtaaaaataataatttcacaaaaaacaagcaaaaatgcTGCTTTCTCCACTAGAATGTATAGTTGTCGTCAAGGTTTCAGTAGCTGTGCTTCTTTTGCTTAATATTCATCAGATGGGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAAgggaaatatgaaaaaaaaatgacaaaaaaactttttaagaaAGCTTTTCATTGTCACTGGATGAAGGcatgtaaaatgtttctatTTAATGCAAAGGTCCTGTTTATATTAAAACCTTTACTTCAGAATTTCAACACCATTTACTTCAAATTGGAATAAAATGTTCTATATTTAACAA

Function

symbol description
rbm24 Enables mRNA 3'-UTR AU-rich region binding activity; mRNA CDS binding activity; and sequence-specific mRNA binding activity. Involved in several processes, including negative regulation of cytoplasmic translation; positive regulation of cell differentiation; and regulation of mRNA metabolic process. Located in cytosol and nucleoplasm.

NR:

description
RNA-binding protein 24

GO:

id name namespace
GO:0003228 atrial cardiac muscle tissue development biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
TU180947 False 2847 TUCP 0.43 4 18006172 18015290
TU180948 False 429 lncRNA 0.42 1 18016531 18016959
XM_039820916.1 True 3285 mRNA 0.42 4 18006128 18017028

Neighbor

gene id symbol gene type direction distance location
cap2 cap2 coding downstream 2286 17980434 ~ 18003842 (-)
vps28 vps28,LOC102796641 coding downstream 28576 17972121 ~ 17977552 (-)
mapk15 mapk15 coding downstream 34692 17960978 ~ 17971436 (-)
grinaa grina,LOC106588904 coding downstream 46136 17945396 ~ 17959992 (-)
LOC120570901 NA coding downstream 86364 17917020 ~ 17919764 (-)
stmnd1 NA coding upstream 1733 18018761 ~ 18022270 (-)
LOC120570833 NA coding upstream 5933 18022961 ~ 18025822 (-)
nup153 NA coding upstream 9872 18026900 ~ 18050474 (-)
ptdss1b ptdss1,LOC102798518 coding upstream 38072 18055100 ~ 18060288 (-)
LOC120571825 NA coding upstream 52557 18069585 ~ 18071145 (-)
G134338 NA non-coding downstream 215513 17790395 ~ 17790615 (-)
G134326 NA non-coding downstream 246780 17758857 ~ 17759348 (-)
G134316 NA non-coding downstream 268053 17737815 ~ 17738075 (-)
G134315 LOC104966617,LOC106515792,LOC103394448,LOC103376406 non-coding downstream 278574 17724737 ~ 17727554 (-)
G134300 NA non-coding downstream 386560 17619358 ~ 17619568 (-)
G134495 NA non-coding upstream 36217 18053245 ~ 18053712 (-)
G134499 NA non-coding upstream 49288 18066316 ~ 18066602 (-)
G134528 NA non-coding upstream 58019 18075047 ~ 18076431 (-)
G134535 NA non-coding upstream 97177 18114205 ~ 18114432 (-)
LOC120571945 NA non-coding upstream 135442 18152470 ~ 18156123 (-)
si:ch211-199g17.9 LOC104947036 other downstream 61654 17938792 ~ 17944474 (-)
LOC120572101 NA other downstream 64028 17941968 ~ 17942100 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 112699 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 163894 17837572 ~ 17842234 (-)
triqk triqk other downstream 414745 17568549 ~ 17591383 (-)
G134893 LOC104963956 other upstream 1447317 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1507150 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1676027 19693055 ~ 20076540 (-)
G134942 NA other upstream 2221356 20238384 ~ 20239260 (-)
LOC120571828 NA other upstream 2931070 20948098 ~ 20953106 (-)

Expression


Co-expression Network