G134715 (atxn1,LOC102783864)


Basic Information

Item Value
gene id G134715
gene name atxn1,LOC102783864
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 18659348 ~ 18674371 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU181237
AATTGCCCATTTATTCCAGATATGTCAaggtttcattttctttttcaaagagGTGCATTTGTACAGATGTCAAATACATACACCGACAGGGTTTCTCCATTGCTATAGAGTAAACGGGTGGTGAGACACAGGGACTTGGTGAGTACAATATAGTACAAACAAGTTGGCTGGGAACTGCTGCGCCCCCCCCCGCAGGACAGACTGTCTGAGCAGGTCTGTGCTGATGTCCAGTTCTCTGCTACCGTCTGATGGGCCAAAACGTTTCAGTTCAGTACTTGGTGTCCTAGGTTAGCAGAGAAACATCTAGACAGACGGGTTGCTAGCCTCAGGGCTGAGTGTTCAGAACAGGGGGGAGGAATCAACTGAGCCACAGCTGACGGATAAGCTCCACCCCCCTCCGTGGCAGTGGgcaaggtcagaggtcacaaaGCATACAGCCTGTCCCCTGCTGAAGTGTTTGTCCCCTTGCACAGAGACTCACAACAAAGACGTTCAGTACACTGAAGAGTAATCCAAGCCATCTCCAGCATAATACACATaatatcataataataattcatagtTAATTGTCAATAATGACAGTTGTTAATCATATCAAATTATATGTAATACATTTACATATCTTATAACCCATATGAAACAGCCCACTGTGTAAATTGATTGGGGTGAAACTAAACTGTTAAGTGGGCctctacatgttttttttttgttttttttttcttttttttctcttttttttatttacaaaaagtgGTCCCCACTAAGCAAtgaggtttattttttttctgtgggtCTCACCATGAACCATTGAGGGTCAGGGTTTATGATCTCACAGACAATTACAGGAGAAAACACtccgttacacacacacacacacacacacacacacacacacacacgcatggacgtgcgcacacacacacacacacacacacacatacacacacacacaaatttaggAAGGCCGCAAGGAcaaaagggaaagagagataTGGATAAACTCTCCATtgggtttgtttttcttcacaaacatcCTGACTCTTGTTTTACAGATGTGACACACCATTAACAAGGACGAGACACTGGAGTAGGACTAGGACTAGCTACATACAATTGGCACAGCAAATGGGGGGGGGTACTGAGGGGAACAACATGTAAGTATTGCACATTGTGGTACATTTCAAGTGGATTAAAAAGGTTAAATTTGCGATTATCTTAACAAAAGTAAAACTACACCAAACCTTCAAAAAAATTTTGAAACCTTGCTGTGATGTGCCATTCCCTCTCCTGCATTCAGAATGCGTCTACATTTCAGATTGCTTTCTTTCATAGTCTATTATTAGGCATGCATTTCCCACTTAAGTATTAACACAAGGACTTTTATAAGCTTGTAGTGAAAAGGAGACCGAATATCAAAAGATGATGTTAGGAGGGGAACAGGCAGCCCAGGCCAGCCCTGCTATGTCCCGGCCAGGCAACACTGAAAGGTAGCTAACGGTTGTTGAGGGTTAATCGATTGCTTTGCCTCTGGAGGAGGTGTGAGGCTGGCTGGCTATGATTGGGTACCTGAAACAAAGTTAACGAGGTCACTACGGGAGTCGTGGCAACAAGGCAAACCTGGGCAGAGTCAAAACGTCGTGACAACGGAGTTCTTGACTCTGACCAGCTGGGACAGCAGAGGTTTCAGGGGTCAGTAACTGCATATGTGAGACAACTCCCTGAAAAACTAGCAACTGGTGTTGCAACTGCAATTTCTTAAGATTTAAGTGTACTTTATGTTAAGGGGAATAGTGCTAACTGAAATAAGTTGTGTTCAGGTATATTAGCTTCTAAAAGCATTTTCCAGTATATGGCAAGATTGGTTTCCCTCTATTGGAGGAAAAGAGGGATTGTTTTGGTTGCAATGCGAGGCGATTACTATTAAATGTTTATTGCAGAGAATTTGAGTGGAttgactgtgtgcatgtgtgtgtgtgtttgtgtgtgtgtgtgttccactcATACACAAGGAGAGTGCCTGAATATTGCCGTACTATTGCTTTCTAAAGTAACCAAAGCAACATCAGTATCACTTGGCTTTGGCTAAAAATCTTTTCACCTGACTGAGAGCAAATGTTTTGATGGACTGAGTGGCTGACAGGTTTGTTTCAATGTTGCTGTTCTACTTTTTCATTTGTTGGGAAGGGAgttggacaaaaacaaaaaaatttacagtatgtgtgtatgacaaacacagccacacacagattgcaaaacacacacacacagacatgcacacactacTATTTCTACTAgtcatgatgatgatgtttcAATAGGAAAATGAAGAAATGAAAATGTACTGTGGTGGTGTTGATGTGAGAAACcctgttttattataaaaaaataaagcatttttaAATCTCATATGCGGTCTAATCATTCATTCACCATCCATCTGCCCATTTACTCAACCATTCGTCATCCATCTGAGCACACATCCTTCCTGCCATCACCATGGTAAACTCCTGCGACCTGAAACAGCATTGCCCCACACAGTTGAAACAGAAAATACGACTGATCCACTATTTTTTGGAGACAATGTCAACTAAAAACGTATAACAACACCTAAATAAAGAGGCCGAGTAGACAGCTCAACAGATATGCCTGCAGGAACCCAcatcttctctccctccttaACACTTATTGTGCCAGCAGCAACCTGTACATGCTGATCTAACTACTGCGCATGATCATACTTCATTGTTACATGCAGTAATGAGAGAAACATCTGCACATTGAATGGCAGCATACAATCAGaacataataaaacacagaCCACATGCGTCTACCATCAGTGATAGATTTAAAAACAACTACAATTACACTGATGTtagagcagaaaaaaaagaaagaaaataaagaccaGTTGCTTGCAAAGCTCTAAATCTTGGGTCAACCAAGCAGGCACATCTGTTGAGATAACTGCTGCATCTTAGCTAAATAAGGTTTCAGCTGGCTGAACGCACAGGCCGTGTTCAAAACTGAACCCTAGTCCCTACACCCTGGTTTCAACACTACAAATGGCATATCTTTAACTAAAGTCAGTAAATTCAGTAGGCAGGCACATGTTAAAATTCTGTTTTACAGCTACGGTTATGTTTGTAAAAactcaaaatgtaatttgaCCTTAACTGCTTTGTTGTTAAAACTTTTCCTCTACAATGTGACAAGTGCCTGTTGAGGACCAAAAACCCTGGGCTCGTCCAGTGTGTCACGTGGTCTAGGGCTCGTTTCAGGACAGGGCGGTTCAAAATCATGTCTCCacccttctccctcctcctgaTGTGCAAATTGCAAGATTCTATTAAGTACGACTCTAAGTAGAAACACTGGACATTTAGCATTGTCTATATATCAAGTGAGTATATCCTTTTCCTATACACAGTATACATACACTCGTGCACAAACtcacacacgtacacaaacacaccacagagCACTCTCTGCAACTGTACTGTTAGCAGTGTGCATCAACCCAATGTCAGTCAACTAGTGTCTTTGCAGTAGGAACAACATGCACCACAAAGTGTCCGCATTCATctaaatacagtacatattatAGGTCATTGAGTTTCAGGGATGGTCTGtactgttttgtgtttgtgtaagcatgtgtgtgtgtatggacaGACACAGACCAGCATCATGCACCCTCTAGCACACACATTACAAATACATGACACCCTTCAAAATTCTGTGGCGCGAGCTTCTAATCGATGCTCTCAGTCTAGTACAGAACATCATTGTGATATTTCAAAAGCCTGTTTCTTGTTAATCCTTATGCCAGATCCCAAACTTTTCACAACACATTCCAATACTTTCCTCTAACTTTTAGCATGGCAGGCTGGCTGTACAAGCACACGTGCTGAAAACCATCATATTTCTAATTCCTTTTGTCACCATAAATGTTTCTCTAACCATCTACTAACTGGATTTCTTTTCCTCCAATACCTGTCACAATCATCCCTTTCTTTGTGATCCCATGGCACGTCCGCTACCACATTTCCAAAACCACCACTTCACTTTTCCAAAAGCTTCACCTTTCAAAAGTGCTGTTGCTACTTTCTACccttgtcttaaaaaaaaaaataaaaaaatctaaaaacatacagtactgcGTAAATAAAGAGACAACTAAAGTTTCTCGGCTGTATGGTGAGTGTGACAGGTGTGTTAAGTGCTTTGAAACATCCTGACCCTCTCAGAACTGACATGCAGATTCTCTCGGTTTCTCTCACACAGCCTTTTtccattaaaaaatatatataaagtaattaTCAAAACACAATGAGGATTGTATGCAGTCTTCCTCTGAACATTTTCTTAAAGTTTAAGTTCGCCAACCCAGTGTGTTTGCACTTGAATATGTGTTAGGATAGGGTATCTCACATTTATACATTAACATTGACCCACCTAGGTTCAATCTAGGACTGAATGACCCCTGATTAAGGTTTTTGACAATCATTGAAAACAACTATCTGGTGAGATAGAAGATGAGgggttaatgacaaaaaaaaaagtaaaatgaaaatgatcaaGATGAAAGTAAAGAATCCACTATCATCCAACTGAACAGAGTAAGTGTTGTTACCTCCCTTTTGCGTGGCACACTGGCACcacctgatgacatcactggtCAGGTCTGGCACACCCCGATGACACTTAGAATAACACATAGAACGTTTATtcgaaaatgaaaaatgtcatgGTTTATCCACAGATTTGTCACGCTCAGGATCAGCGGACATTGTACCACTCCTGTGGCCCAGTGTAAAACCACAGAGATGGTgggagagagtttttttttttgtccaggcTGCCTCAGCGGCAGTGCAAAGGCAGTGAAATCCCTGTCAAGAGGCAAACTGTCAGCTAATTTAATTTGAAATTTacataatgtgtaatgtgtagCCAGCCAAGAAGAGCCATCAAGCATTGCTCCTGTGTGCCACACAGCCACCAATAAGCATTTAGCACGCCTCACAAATCCCTCACCATAAGTCATCTCATGAAAACCACCAAAACGGCACTGATTGCTTGTGTGATATCAAATCCATCTatgaaaaaatgtgttcttgaCTACATGGACTTAATGTAAGGTGATACCATGTAGGGTAAATTTACCTCTACAGTACAGTATTTaagatagaaaaataaaaacggaaAACAAAACTTTAAAACCAAGACAAATGAAACATTAATGTGGGCGTTCATGTTTTTCTTGCAgaatccttcttttttttcttcttttttttcaaatcccaATGGTTATTGAACATTCCTGCTAGCCTTCACTTGCCAATACTTGACCTTCCCTCGATGCTGACTTTCACCTCATGAGAGATGAAGGAAGGTTTGGGCAGGGTCAAGGGCGGCTCCTCCTCGGATCTTTCTACTTTTCGTCCTTCAGGAGCAGACCATCTCCGCTTCCTTCGTCCTGATGGCTTAGTGACGCCAGCTTCAGCGCTGTTGGCAACCTGACCTTTAGAAACTGACCCTCTTCCCCCAAACACGAGATCCCCGTTTTCCACATTGGTGCCTCCTCCACTTCTATTCCCAGTTCCACCCCTCCCTCGATAGCTGATACCATTCTCCCGCTCATTGTGCCTGGAGCCTCCTCCACTGCAGCTTTGGGGAGTGTCTGGGACAGCTCTGGGGGGTTTCAGGTGCCCGTAGCTGGACGCTGGGACAGAGGCAGGGGTGGCCAACTCCAGGGGCTGAGTCTTCTTTAGGGATCCGTTCCTCAGGTTCTTGAGGGTGAGTGAAATACACACATCGCCCACAGAGAGCTTGGAGCAAGGCAGCTCCAGAAGCTGGGTGGTCCGGTCTGGGCAGCATGAAGACCAGCCCTGGCCAAAGACGAAGAAGGGGT
>TU181238
AATTGCCCATTTATTCCAGATATGTCAaggtttcattttctttttcaaagagGTGCATTTGTACAGATGTCAAATACATACACCGACAGGGTTTCTCCATTGCTATAGAGTAAACGGGTGGTGAGACACAGGGACTTGGTGAGTACAATATAGTACAAACAAGTTGGCTGGGAACTGCTGCGCCCCCCCCCGCAGGACAGACTGTCTGAGCAGGTCTGTGCTGATGTCCAGTTCTCTGCTACCGTCTGATGGGCCAAAACGTTTCAGTTCAGTACTTGGTGTCCTAGGTTAGCAGAGAAACATCTAGACAGACGGGTTGCTAGCCTCAGGGCTGAGTGTTCAGAACAGGGGGGAGGAATCAACTGAGCCACAGCTGACGGATAAGCTCCACCCCCCTCCGTGGCAGTGGgcaaggtcagaggtcacaaaGCATACAGCCTGTCCCCTGCTGAAGTGTTTGTCCCCTTGCACAGAGACTCACAACAAAGACGTTCAGTACACTGAAGAGTAATCCAAGCCATCTCCAGCATAATACACATaatatcataataataattcatagtTAATTGTCAATAATGACAGTTGTTAATCATATCAAATTATATGTAATACATTTACATATCTTATAACCCATATGAAACAGCCCACTGTGTAAATTGATTGGGGTGAAACTAAACTGTTAAGTGGGCctctacatgttttttttttgttttttttttcttttttttctcttttttttatttacaaaaagtgGTCCCCACTAAGCAAtgaggtttattttttttctgtgggtCTCACCATGAACCATTGAGGGTCAGGGTTTATGATCTCACAGACAATTACAGGAGAAAACACacacacacacacacacacacacacacact

Function

symbol description
atxn1 Enables several functions, including identical protein binding activity; protein C-terminus binding activity; and single-stranded RNA binding activity. Involved in negative regulation of transcription, DNA-templated and nuclear export. Located in cytosol; nuclear inclusion body; and nuclear lumen. Implicated in spinocerebellar ataxia type 1.

NR:

description
PREDICTED: ataxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181237 True 5914 lncRNA 0.42 2 18667482 18674371
TU181238 False 884 lncRNA 0.42 3 18659348 18674371

Neighbor

gene id symbol gene type direction distance location
pag1 pag1 coding downstream 144015 18465576 ~ 18515333 (-)
znf704 znf704 coding downstream 194832 18416621 ~ 18464516 (-)
zbtb10 zbtb10 coding downstream 275935 18367018 ~ 18383413 (-)
hey1 hey1,LOC103376003 coding downstream 347345 18309079 ~ 18312003 (-)
si:dkeyp-120h9.1 LOC103376020,LOC104947060,LOC101167380 coding downstream 367607 18277779 ~ 18291741 (-)
gmpr gmpr coding upstream 3548 18677919 ~ 18687547 (-)
mylipa mylip,LOC102784424 coding upstream 20350 18694721 ~ 18711915 (-)
jarid2b jarid2 coding upstream 126190 18800561 ~ 18918205 (-)
rpl30 rpl30,LOC107556383,LOC107710097 coding upstream 423298 19097669 ~ 19100464 (-)
rida rida,LOC103371553,LOC100710570,LOC104918643,LOC103394382 coding upstream 433916 19108287 ~ 19113803 (-)
G134656 NA non-coding downstream 132070 18524206 ~ 18527278 (-)
G134652 NA non-coding downstream 188974 18460146 ~ 18470374 (-)
G134629 NA non-coding downstream 246351 18409947 ~ 18412997 (-)
G134632 NA non-coding downstream 326416 18332622 ~ 18332932 (-)
G134623 NA non-coding downstream 355821 18297387 ~ 18303527 (-)
G134744 pard6g,LOC104957088,LOC107394702 non-coding upstream 367701 19042072 ~ 19047625 (-)
G134745 NA non-coding upstream 368584 19042955 ~ 19048442 (-)
G134757 NA non-coding upstream 387362 19061733 ~ 19063752 (-)
G134763 NA non-coding upstream 398623 19072994 ~ 19074211 (-)
G134766 LOC104918647,LOC100710839,LOC101170198,LOC101069529 non-coding upstream 405215 19079586 ~ 19083191 (-)
rbm24a rbm24 other downstream 642320 18006128 ~ 18017028 (-)
si:ch211-199g17.9 LOC104947036 other downstream 714874 17938792 ~ 17944474 (-)
LOC120572101 NA other downstream 717248 17941968 ~ 17942100 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 765919 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 817114 17837572 ~ 17842234 (-)
G134893 LOC104963956 other upstream 789974 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 849807 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1018684 19693055 ~ 20076540 (-)
G134942 NA other upstream 1564013 20238384 ~ 20239260 (-)
LOC120571828 NA other upstream 2273727 20948098 ~ 20953106 (-)

Expression


Co-expression Network