XLOC_004798 (gfra1b)


Basic Information

Item Value
gene id XLOC_004798
gene name gfra1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 29763546 ~ 29818209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009478
GTGTATATGATGTCTGATCACTTGTTCCTCGCCAGTGCGCAGCTGGCGCGCAATGGATTTATTGTGGAATTTGTTCTATGTCGTATTTAACCAGTTTCTCTGCTCTCTGAATGGATCTGAATAAAGCGACGATGATATTCGCAACTTTTTGGATAATGTTTCCTGTGCTTGATTTAGTGCACTTCTCAAAGGCAGATGCGATCGCACAGTCTCGCTCGGTTCGGCTGGACTGCGTTAGGGCTCATGAACAGTGTTTGGGAAAGTACGGATGCAGCACCAAGTACCGCACTATGAGACAGTGTGTGGCCGGGAGAACCGGTAACTTCAGCATGCTGGCTGAACCAGAGGCGCAGGACGAGTGCAGGAACGCCATAGAGTCGATGAAACAGAGTCCTCTGTATGACTGCAAGTGCAGGAGAGGAATGAAGAAAGAAAAGAACTGCCTGCGCATCTTCTGGAGTATATATCAAAGTTTACAGGCTAATGACTTATTGGAAGACTCGCCATATGAGCCCGTAAACAGCCGTCTGTCTGATATTTTTCGTCTGGCTCCCATCATATCAGGTGAAGCGGCCTTTACCAAGGACAACAACTGCCTGAATGCTGCCAAGGCCTGCAACCTGAATGACACATGTAAGAAGTACCGCTCCTTGTACATCAGCCCCTGCACCAGTCGAGTCTCCACTACTGAAGTGTGTAACAAGCGCAAGTGCCACAAGGCCCTGCGGCAGTTCTTCGACAAGGTGCCACCGAAGCATAGCTATGGCATGCTTTTCTGCTCCTGCCCCTCCGGGGATCATTCGGCTTGCTCCGAGCGCAGACGTCAGACCATCGTGCCAGCCTGCTCCTACGAGGACAAGGAAAAGCCCAACTGTCTCTCCTTGCAAGCCTCCTGCAAGACCAACTACATCTGCAGATCTCGTTTAGCTGACTTCCTCACTAACTGTCAACCTGAGGCCCGCTCGATATCAGGGTGTCTGAAGGAAAACTATGCTGACTGTCTGCTGGCATATTCAGGGCTCATTGGTACGGTGATGACCCCGAACTACCTCCGCGCACCTGGCATCAGCGTGTCACCTTGGTGTGACTGTAGTAACAGCGGAAACGGAAAAGCAGAGTGTGACAAGTTCACCGAGTTTTTCACCAACAACCGTTGTCTCCGCAATGCCATCCAGGCATTTGGCAATGGCACAGATGTAGGAGTGTGGCAACCCCAACCACCCATCATGTCCACTCCAGCTGACCCCTACACCCCCCCAAAAGGACGCGACAGGACATCCAACGCCCTGGATGACCCAACACTCACCAATGACCTCGACAGCAATGCAGACCATCTCTACAGCTTCTGTGGAAGCCTGCAGGCTCAGAAACTGAAAAGCAATGTTACTCTGGACGTTCTTTGTGTGGATCAGCAGCTGAATGACCCCAGTAGCTTTAATGCAATCACTCGGAGCTCGACTAGTGCTGTCTGTCTGGTGGACTGGactgttcttctgctgctgtctctgctCTCAATTCTTCACCTCGACCATCTTACAGCCTCACAAACTGTATAG
>TCONS_00009479
GATTTAGTGCACTTCTCAAAGGCAGATGCGATCGCACAGTCTCGCTCGGTTCGGCTGGACTGCGTTAGGGCTCATGAACAGTGTTTGGGAAAGTACGGATGCAGCACCAAGTACCGCACTATGAGACAGTGTGTGGCCGGGAGAACCGGTAACTTCAGCATGCTGGCTGAACCAGAGGCGCAGGACGAGTGCAGGAACGCCATAGAGTCGATGAAACAGAGTCCTCTGTATGACTGCAAGTGCAGGAGAGGAATGAAGAAAGAAAAGAACTGCCTGCGCATCTTCTGGAGTATATATCAAAGTTTACAGGCTAATGACTTATTGGAAGACTCGCCATATGAGCCCGTAAACAGCCGTCTGTCTGATATTTTTCGTCTGGCTCCCATCATATCAGAGTAATTCTATGGGGAAAAAATATTGGAAAAGGTGCACCAGTTCTGGCATGTCCCCGCAACCCTGAGTAATAACTCACAGCTGGGCTGTACAGGAGCGAGCAGGATGTTTATGGCCGCTGCCAGTGAAGGTCCAATAAAAA

Function

symbol description
gfra1b Predicted to enable signaling receptor activity. Acts upstream of or within enteric nervous system development. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; presumptive enteric nervous system; pronephric duct; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010226-3 Predicted to enable signaling receptor activity. Acts upstream of or within enteric nervous system development. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; presumptive enteric nervous system; pronephric duct; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).

Ensembl:

ensembl_id ENSDARG00000102564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009478 False 1556 mRNA 0.51 9 29763546 29818209
TCONS_00009479 True 535 processed_transcript 0.49 3 29764043 29767260

Neighbor

gene id symbol gene type direction distance location
XLOC_004797 BX072570.2 coding upstream 331355 29432075 ~ 29432191 (+)
XLOC_004796 NA coding upstream 390132 29312565 ~ 29373414 (+)
XLOC_004795 bms1 coding upstream 493184 29240124 ~ 29270362 (+)
XLOC_004794 mxtx2 coding upstream 525731 29236274 ~ 29237815 (+)
XLOC_004793 adgra1a coding upstream 551948 29131689 ~ 29211598 (+)
XLOC_004800 CU464184.2 coding downstream 141731 29959940 ~ 29960054 (+)
XLOC_004801 CU464184.1 coding downstream 152304 29970513 ~ 29970629 (+)
XLOC_004802 ablim1b coding downstream 228111 30046320 ~ 30220346 (+)
XLOC_004803 afap1l2 coding downstream 415768 30233977 ~ 30308351 (+)
XLOC_004804 si:ch211-225b10.3 coding downstream 541975 30360184 ~ 30367008 (+)
XLOC_004791 AL732488.1 non-coding upstream 749856 29013573 ~ 29013690 (+)
XLOC_004786 NA non-coding upstream 817396 28933524 ~ 28946150 (+)
XLOC_004779 NA non-coding upstream 1145581 28617701 ~ 28617965 (+)
XLOC_004806 CR932360.2 non-coding downstream 611624 30429833 ~ 30432964 (+)
XLOC_004807 NA non-coding downstream 652772 30470981 ~ 30475152 (+)
XLOC_004810 CU695011.1 non-coding downstream 691074 30509283 ~ 30509399 (+)

Expression


Co-expression Network