XLOC_000048 (kpnb3)


Basic Information

Item Value
gene id XLOC_000048
gene name kpnb3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2260407 ~ 2299553 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000097
GGCTTTCATTCGCTCGTCCCTCTTTCTGAATCCAGCAGCGATGGCGGAGCAGCAGCAGTTCTACCTCTTACTGAGCAACCTGATGAGCCCTGACAACACCGTCAGGAAGCAATCTGAGGAAGCGTATGACACCATTCCCGGTCAGACCAAgatcacatttttactgcaggcCATCCGTGATGCATCCGCTGCCGAGGAGGTTAAGCAGATGGCGGCTGTTCTGCTGCGCCGCCTGCTGTCCTCATCTTTTGAGGAGGTTTATCCCAACCTGACCGTAGACATCCAGACGGCCATCAAGACAGAGCTGCTCGCTGGAATCCGGTCTGAAGCCTCCACCAACATCCGCAAGAAGACCTGTGATATTGCTGCAGAGCTCGCACGCAATCTCATCGATGATGACGGCAATAACCAGTGGCCAGAAATCCTCAAGTTCCTGTTTGATTCAGTCAACTCTCAAGATGTCGGCCTCCGAGAAGCAGCGCTGCACATTTTCTGGAACTTCCCAGGCATCTTCGGCAATCAGCAGCAGCATTACATGGAAGTGATCAAGCGCATGTTGGTTCAGTGCATGCAGGACCAGGAAAACCCACAGATTCGAACCCTCTCTGCACGTGCAGCTGCATCCTTCATCCTGTCCAATGAGGGAAACACAGCCCTGCTGAAACACTTCTCTGACCTTCTTCCTGGCATCCTGCAGgcagtgaatgAGTCCTGTTACCGTGGTGATGACTCTGTGCTGAAGTCGTTGGTGGAGATTGCAGACACGGCCCCCAAATACCTGAGACCAAACCTAGAAGCCACTCTGCAGCTGAGCCTGAAGCTGTGTGCAGACACAAACCTCACCAACATGCAGCGTCAGCTTGCTCTGGAAGTCATCGTCACGCTGTCTGAAACTGCAGCTGCCATGCTGAGGAAACACACCAACATCGTTGCTCAGAGCGTGCCTCAGATGTTGACTATGATGGTGGATCTGGAGGAGGATGAGGAGTGGGCCATGGCTGATGAACTGGAGGATGACGATTTCGACAGTAATGCTGTTGCTGGTGAAAGTGCTCTGGACAGGATTGCATGTGGCCTTGGAGGAAAGATCATCCTTCCCATGATTAAACAGCACATCATGCAGATGCTGCAGAACCCGGACTGGAAGTACCGGCACGCGGGTCTGATGGCTCTGTCTGCGATTGGCGAAGGCTGTCATCAACAGATGGAGGCCATTCTGAGTGAAATTGTCAGCTTCGTCCTGCTCTTCTGTCAGGATCCACACCCCAGGGTTCGATACGCTGCTTGCAATGCTATTGGACAGATGGCCACAGACTTCGCCCCAACCTTCCAGAAGAAATTCCATGACAAGGTGATCTCTGCGCTCCTGCAGACCATGGAGGATCAGTCGAACCCTCGCGTTCAGGCTCACGCAGCAGCCGCTCTCATCAACTTCACAGAGGACTGTCCTAAAACCCTGCTCGTCCCGTATCTGGACAGCCTCGTCCAGCATCTGCACGTCATCATGGTGGCCAAGCTGCAGGAGCTGATCCAGAAAGGCACTAAACTGGTGCTGGAGCAGGTGGTGACGTCCATCGCTTCGGTGGCTGATACCGCGGAGGAGAAGTTTGTGCCGTATTACGATCTGTTCATGCCGTCTCTCAAACACATCGTAGAAAACGCCATTCAGAAAGAGCTTCGTCTGCTCCGAGGAAAAACCATCGAGTGCATCAGCCTGATCGGCCTGGCTGTGGGCAAAGAGAAGTTCATGCCGGACGCCTCAGCGGTGATGCAGCTCCTCCTGAAGACTCAGACTGACTTCAATGACCTGGAGGATGACGATCCGCAGATCTCTTACATGATCTCTGCATGGGCCCGCATGTGTAAGATCCTGGGGAAGGAGTTTCAGCAGTATCTGCCTGTGGTGATGGGGCCGCTGATGAAAACTGCGTCCATTAAACCTGAAGTGGCCCTACTAGACACTCAGGACATGGAGAACATGTCTGAAGATGACGGCTGGGAGTTTGTGAATCTGGGCGATCAGCAGAGTTTTGGCATTAAGACTGCAGGACTGGAGGAAAAGGCCACGGCCTGCCAGATGCTGGTGTGCTACGCTAAAGAGCTGAAGGAGGGTTTTGTTGAATACACAGAGCAGGTGGTGAAGCTGATGGTTCCTCTGCTCAAGTTCTACTTCCATGATGGTGTGCGAGTGGCTGCCGCGGAGTCCATGCCTCTGCTGCTGGAGTGCGCTCGTGTCCGTGGCCCAGAATACCTCACTCAGATGTGGCACTTCATGTGTGACGCCCTCATCAAAGCCATCGGCACTGAACCAGACTCAGACGTGCTGTCAGAAATCATGCATTCATTCGCTAAGTGCATCGAGCTGATGGGTGACGGATGCCTGAACAATGAACACTTTGAGGAGCTCGGCGGCATCCTGAAAGCAAAACTGGAGGAGCACTTTAAAAACCAGGAGGTCCGACAAGCCAAACGTCAGGATGAAGACTATGATGAGCAGGTTGAGGAGACGCTACAGGATGAGGATGAAAATGACGTCTACATCCTGACCAAGGTTTCAGACATCCTGCACTCCATCTTCAGCAGCTACAGAGAGAAGGTTCTGCCGTGGTTCGAGCAGCTTCTACAGCTCATCGTCAACCTGATTTGTCCACACAGACCCTGGGCTGACAGACAGTGGGGTCTGTGCATATTTGATGATGTCGTCGAACACTGCAGTCCTTCTTCTTTTAAATACGCTGAGTACTTCCTGCGGCCCATGATGCAGTCGTTGTGTGACACCAGCCCGGAGGTCCGGCAGGCTGCTGCGTACGGTGTCGGGGTCATGGCTCAGTTTGGAGGAGAAAACTACAGGCCTGCCTTTACTGAGGCCGTCCCGCTCCTCGTAGGTGTGATCCAGTCTGCAGACTCCCGAGCCAAAGAAAACGTGAACGCTACTGAGAACTGCATCTCTGCTGTGGCCAAAGTCATGAAGTACCGGCCCGAGTGTGTGAACGTCACCGAAATCCTCCCTCACTGGCTCTCCTGGCTGCCACTCAACGAGGACAAAGAGGAAGCAGTTCACACCTTTAATTATCTCTGTGACCTCATCGAAAGTAACAATCCTATCGTCCTGGGACCCGATAATACAAACCTTCCCAAGATTTTCGCCATTATTGCTGACGGTGTTGCGAATGAATCAGTTAAAGGTGAAGACGGATGCAGCAAACGACTGGCCAACGTCATTCGCCAAGTACAAGTTTCTGGAGGCCTGTGGACGCAGTGTGTGTCAGCGCTGAACGAGACGCAGCAGAAGGCCATCCAGGATCTCCTGAACACGGCCTGAGAATCGAGCGAAGCCTTAACCCTGATAAACAAACAGCCCATCTATGAGGATTAAACAAACTCTGCACCTCGATCCCCACATCTAGACTTTTGGCCCTTTCCCTGTTTTGAGCAAAGAACCGTCATGTGACTCTGAGCCGCTGGACCTGAGATCTCCACGTCTTTAACATCGAGGAATGCAtttgcgtgcgcgtgtgtgtatcCTGAAAATAAAAAGGGCCGAGAAGCCTCATCTTGAGTGGACGTGGGGGGGGGGGTTTAGGGGTATGAAATGAATCTTAACCATCATCCATTGTAGATCTTCAGAATTTCTGGTGTAGAAATTGTGCTTTTCTCCCTAACGAGATCAGTTATAGTTGTTTTGTCacaactctgtgtgtgtgcgagcgtgtgtgtgtgtgtcgaccCAAGCCCAAGCTGATTTAGGGCTGTATCCGGCTGTCCTCTCCCCCGGATCGGACTGAATGGACTGGTGTTGGTTGAGCTCTACTGCAGCAGAGCGATGATGCTGCGGTCgactttagtttgtttttgttttgttctttcggCTTTTTGTTTTCTCTTCGGCACCGGTCCTGATGGCTGGTGCTGATGTTTGGGAGAATCGGGCATCGTTTGCTCCTccgctgatgatgatgatgtcctAACAGTGTCTGTCATTGGCTCTCTTAATCCATGCAAAGAAATAcacaaacatgaataaaacagCGACTCTGGGTTCAGGGCTTCTCATATGAAGGAAATGCGCAAGTCTGAAGCCGTTTGGTTTGGCTGACGGTTTGTCACGTGTCCATCGAACATTTGTATGATATGCAATCTATCCTGGTTAATCATTTTACAACACTTTCAGTATTAAAGCTGCAAGACATGATGAA
>TCONS_00000098
GTCAACTCTCAAGATGTCGGCCTCCGAGAAGCAGCGCTGCACATTTTCTGGAACTTCCCAGGCATCTTCGGCAATCAGCAGCAGCATTACATGGAAGTGATCAAGCGCATGTTGGTTCAGTGCATGCAGGACCAGGAAAACCCACAGATTCGAACCCTCTCTGCACGTGCAGCTGCATCCTTCATCCTGTCCAATGAGGGAAACACAGCCCTGCTGAAACACTTCTCTGACCTTCTTCCTGGCATCCTGCAGgcagtgaatgAGTCCTGTTACCGTGGTGATGACTCTGTGCTGAAGTCGTTGGTGGAGATTGCAGACACGGCCCCCAAATACCTGAGACCAAACCTAGAAGCCACTCTGCAGCTGAGCCTGAAGGTGAGAGGATGTGCAGACGAATACCTCACTCAGATGTGGCACTTCATGTGTGACGCCCTCATCAAAGCCATCGGCACTGAACCAGACTCAGACGTGCTGTCAGAAATCATGCATTCATTCGCTAAGTGCATCGAGCTGATGGGTGACGGATGCCTGAACAATGAACACTTTGAGGAGCTCGGCGGCATCCTGAAAGCAAAACTGGAGGAGCACTTTAAAAACCAGGAGGTCCGACAAGCCAAACGTCAGGATGAAGACTATGATGAGCAGGTTGAGGAGACGCTACAGGATGAGGATGAAAATGACGTCTACATCCTGACCAAGGTTTCAGACATCCTGCACTCCATCTTCAGCAGCTACAGAGAGAAGGTTCTGCCGTGGTTCGAGCAGCTTCTACAGCTCATCGTCAACCTGATT
>TCONS_00000100
CCATGCCTCTGCTGCTGGAGTGCGCTCGTGTCCGTGGCCCAGAATACCTCACTCAGATGTGGCACTTCATGTGTGACGCCCTCATCAAAGCCATCGGCACTGAACCAGACTCAGACGTGCTGTCAGAAATCATGCATTCATTCGCTAAGTGCATCGAGCTGATGGGTGACGGATGCCTGAACAATGAACACTTTGAGGAGCTCGGCGGCATCCTGAATGGACTGGTGTTGGTTGAGCTCTACTGCAGCAGAGCGATGATGCTGCGGTCgactttagtttgtttttgttttgttctttcggCTTTTTGTTTTCTCTTCGGCACCGGTCCTGATGGCTGGTGCTGATGTTTGGGAGAATCGGGCATCGTTTGCTCCTccgctgatgatgatgatgtcctAACAGTGTCTGTCATTGGCTCTCTTAATCCATGCAAAGAAATAcacaaacatgaataaaacagCGACTCTGGGTTCAGGGCTTCTCATATGAAGGAAATGCGCAAGTCTGAAGCCGTTTGGTTTGGCTGACGGTTTGTCACGTGTCCATCGAACATTTGTATGATATGCAATCTATCCTGGTTAATCATTTTACAACACTTTCAGTATTAAAGCTGCAAGACA
>TCONS_00000101
GGTGAATTGTTGAGCACAACTAGCTatTAACAATCCTATCGTCCTGGGACCCGATAATACAAACCTTCCCAAGATTTTCGCCATTATTGCTGACGGTGTTGCGAATGAATCAGTTAAAGGTGAAGACGGATGCAGCAAACGACTGGCCAACGTCATTCGCCAAGTACAAGTTTCTGGAGGCCTGTGGACGCAGTGTGTGTCAGCGCTGAACGAGACGCAGCAGAAGGCCATCCAGGATCTCCTGAACACGGCCTGAGAATCGAGCGAAGCCTTAACCCTGATAAACAAACAGCCCATCTATGAGGATTAAACAAACTCTGCACCTCGATCCCCACATCTAGACTTTTGGCCCTTTCCCTGTTTTGAGCAAAGAACCGTCATGTGACTCTGAGCCGCTGGACCTGAGATCTCCACGTCTTTAACATCGAGGAATGCAtttgcgtgcgcgtgtgtgtatcCTGAAAATAAAAAGGGCCGAGAAGCCTCATCTTGAGTGGACGTGGGGGGGGGGGTTTAGGGGTATGAAATGAATCTTAACCATCATCCATTGTAGATCTTCAGAATTTCTGGTGTAGAAATTGTGCTTTTCTCCCTAACGAGATCAGTTATAGTTGTTTTGTCacaactctgtgtgtgtgcgagcgtgtgtgtgtgtgtcgaccCAAGCCCAAGCTGATTTAGGGCTGTATCCGGCTGTCCTCTCCCCCGGATCGGACTGAATGGACTGGTGTTGGTTGAGCTCTACTGCAGCAGAGCGATGATGCTGCGGTCgactttagtttgtttttgttttgttctttcggCTTTTTGTTTTCTCTTCGGCACCGGTCCTGATGGCTGGTGCTGATGTTTGGGAGAATCGGGCATCGTTTGCTCCTccgctgatgatgatgatgtcctAACAGTGTCTGTCATTGGCTCTCTTAATCCATGCAAAGAAATAcacaaacatgaataaaacagCGACTCTGGGTTCAGGGCTTCTCATATGAAGGAAATGCGCAAGTCTGAAGCCGTTTGGTTTGGCTGACGGTTTGTCACGTGTCCATCGAACATTTGTATGATATGCAATCTATCCTGGTTAATCATTTTACAACACTTTCAGTATTAAAGCTGCAAGACA

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030424-2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).

Ensembl:

ensembl_id ENSDARG00000040245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000097 False 4196 mRNA 0.52 26 2260407 2299553
TCONS_00000098 False 792 processed_transcript 0.52 8 2272261 2288773
TCONS_00000100 False 620 processed_transcript 0.48 3 2286849 2299546
TCONS_00000101 True 1123 lncRNA 0.47 3 2296591 2299546

Neighbor

gene id symbol gene type direction distance location
XLOC_000047 rap2ab coding upstream 20288 2222363 ~ 2240119 (+)
XLOC_000046 mbnl2 coding upstream 42546 2101541 ~ 2217861 (+)
XLOC_000045 slc5a3a coding upstream 233307 2025085 ~ 2027100 (+)
XLOC_000044 NA coding upstream 236762 2023409 ~ 2023645 (+)
XLOC_000043 NA coding upstream 254775 2001716 ~ 2005632 (+)
XLOC_000050 farp1 coding downstream 2405 2301958 ~ 2444210 (+)
XLOC_000051 CR352215.2 coding downstream 103550 2403103 ~ 2403224 (+)
XLOC_000052 gpc6a coding downstream 413403 2712956 ~ 3036019 (+)
XLOC_000053 NA coding downstream 1419113 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 coding downstream 1460371 3759924 ~ 3760034 (+)
XLOC_000034 NA non-coding upstream 641093 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 682156 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 899576 1358731 ~ 1360831 (+)
XLOC_000056 FO744838.1 non-coding downstream 2298507 4598060 ~ 4680477 (+)
XLOC_000057 NA non-coding downstream 2601907 4901460 ~ 5030155 (+)

Expression


Co-expression Network