LOC120571788 (LOC103147980,LOC106964283,LOC107396830,LOC103369207)


Basic Information

Item Value
gene id LOC120571788
gene name LOC103147980,LOC106964283,LOC107396830,LOC103369207
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34540077 ~ 34573377 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU186657
TACAATGTTGACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAGGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAACCAGGGAAACCGATCGTAGAGAACATCATAGATGCCATATATGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGCTTCCGTCTGTTCGACGAACAGAAAGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAGCTGTCTCCTTACTACCGCATGAGGAAG
>XM_039820875.1
TGACGTGTTGTGTTGTCCTCTACAGATGTGATTCCTTGAACAACATTCAACAAATCTCTGCCTGAAGTAACTCCTTCCAGCGGTGGTCCTAAACATTGGCATCATGCCAGCAATGGGAGGTTTGTCTTTGTACTACATAAAGACACTTGTAGTCTTAATTCTGTGTCTAGGGCATCACCTGAACCCTTCCCTGGCTTATTCTCTGAAAAACTGCTGCATCGGTTATTCTAACGACGCCTTGGCTGATGTTGTTTTGCATTGCTCGCAACATCATCTTGTATCTGTCCCTGATGACATACCCAGAGATGTGAATGTATTGTATCTCTCGATCAATCAGCTTGAACAGATACACAGGGATGATTTCCGGGACATGTCAAAGCTTAGAGTTTTGTCACTGGACAATAATCAGATTACTCACGTGGACGATGGATCTTTCATCCATTTGATTGCGTTATCAAGGCTCCACATGGCCTATAACAAACTCAGCGATCTGACAGGTAACCTCTTTCAGGGACTGTTCAACCTTACCATGCTTGATCTCTCCGGTAACAACATTCAGTCCATTCATACCTCGGCCTTTCAGTCTCTGTCCAGATTAGAAACCGTGATTTTAGACTCAAACAAGCTGCAAAAAGTCGCTGACATTCAGCCCATCCTACAACTACCACTTATACAGAAACTTACTATTACACGTAATCTATTTCCCTCATTTCAGACCAACGATCTGCTGCTGAATGAGCCCTCAAGCCTGAAGGTGTTAGATTTTTCGAATGATGTGTTTGAAAAGTTCAGCATCACAACAAACATCTTTCCTCACCTTGAGATGATAGACTTTTCTATGTCTGGCCAAGTTGCCGGCTGGAAATGGGACATTCCTGACAAGACTTTACTCAGGAACATAACTCAGCTGTATTTTAATTCCCCGTGTATTGCTTTCAAAGAGATCCGAAAAGTCCTGCAGAGCCTCGACTCACTGATGCATCTGAGACTGAATTATATGGAGAAGTGGATCAAAAAAGGTCTCCTAGCTACGGTTTGCAAGATACCGACACTTGAGAAGCTGGATCTGTATTGGAACAAAGTCCCCAATATAAGTGAAAAGCTTGTAACTTGCTCTCAGCTGAGTGAGCTTGATTTGTCATCTACTTCAATGACTGAACTGTCTAAAGGCTCGATTCGACTGATGAAGCAACTGAGTTCCCTAAATTTAAAGAATAACTTCCTCGCCAAGGTGCCAGATGACATTCggactctctcctctctcaagATCCTAAATATTGGTGTCAATGCTATTTCTGAGTTGAGCTGTGAGGATTTCACAAACACAACGCGCCTCAGAGAGCTTCATCTGCACAACAACCACATTGCCAAACTGGACAGATGTGTCTTTGAAAGTCTTAATGACCTGAAGATTTTAGATATGAGCGACAACCTGCTGTGGACATTCGGAGACGCCTTCAAAATAGGCCTGAAGAAGCTTGAGTTCTTGGATCTGAGCAACAACTTTGTACTTCTTCTTGATAAGGGGGATTTTCAAAGTTTAGGGTCCTTAAAATATTTGGATGTGGTGTCAAAACATATCTGGAGCGTGACACATAAGGCTTTCGATGGATTGAATAACCTGCGTAACCTAAGTGTATCTCTTCCATTtgaatttgaaaataaattcagAGGTTTACAGCAGTTGGAAAATCTTACAATTTACTTCATTAGTGACAGTTTCAAAGGTCCTCAACCAAACAATTATAAAgctttatttcatttaaaatccATGACATTTCTCACAGTAATATGCAAGGGTTTTCCCCTTGAGATACCAGAAATTCTCCAGGCTATGAAACATTTAGAAGACTTCACAGCTGAGAATTTCTTCATTTCTGGACCAGATGTGGACACTTTTCAATACAATCGCCAGCTTAAAAGTTTGACAATCAGACGGACTGATCTGTCCGACTTGGATCCTAGACTGTTTCAGCCAATGCCGCTCCTGCAGGTCCTTGATTTCTCCGAAACTAAGATAAAGTCTTTGGACTTTCTGTTCCAGGCTGATCTATATGCACTCAGATGTTTGAAACTAAGTGACAATGAGATAACTGTGATCAATGAGACGGTCTTCCAATTTCTCCCTGCACTAACATACCTCGATGTGGAAAACAACCCTTTTACTTGTGACTGCTCTAACGCCGGCTTTATCCAATGGGTGAAGAACAACAACCAAACTCAGGTTGTTAACGCCTACCAATACACATGTTCCTTCCCTGTGGCTGAACAAGGAAACAAGCTTCTGGACTTTGACATCCTGTCCTGTTGGATGGACGTTAGCTTCCTCTGCTTCATTTCCAGCACGTGCCTGGTTGTTTTTACACTCCTCGCATCCTTCATCTACCACTTTCTGAGGTGGCAGCTAGCCTATGCCTACCACCTTTTCCTGGCCTTTCTATATGACAGCAGGAAGAGAAAGGCGGGAGCTTGTCATCTGTATGACGCCTTCATCTCCTACAATGTTGACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAGGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAACCAGGGAAACCGATCGTAGAGAACATCATAGATGCCATATATGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGCTTCCGTCTGTTCGACGAACAGAAAGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAGCTGTCTCCTTACTACCGCATGAGGAAGCTGGTGAAGAAACGCACCTACCTGAGTTGGCCCAAGGCCGGCCATCACACGGGAGTCTTCTGGCAGAACGTAGGGAGAGCTCTTGAGACGGGGGACGCTCCCACCGAGACCGCTGACCTGCTCACTGGACCGGCAGGACGCTGAAAAACATAAGTtggaaaaaagctaca
>XM_039820876.1
GGAGTAGCAGAAATCGAGTGACAAGCATGTCAACATAAGTGCGTGTCTTCTTGTCTTCTAGTTTGAAGCAGTTGTCATTTGGTGTAAGGAAATCACTCATATCAAAAAAGGGAATTGAGATGACTGACCAGATGTGACCAATATATCTTCCGCTGCTGTCGTGGACACATCACAACTGAGAAACAAAGATGCTCTGTTCACACTGCTAAGACGCGGCGCTCTAAAGACGTACTATGTGATTCCTTGAACAACATTCAACAAATCTCTGCCTGAAGTAACTCCTTCCAGCGGTGGTCCTAAACATTGGCATCATGCCAGCAATGGGAGAGATCCGAAAAGTCCTGCAGAGCCTCGACTCACTGATGCATCTGAGACTGAATTATATGGAGAAGTGGATCAAAAAAGGTCTCCTAGCTACGGTTTGCAAGATACCGACACTTGAGAAGCTGGATCTGTATTGGAACAAAGTCCCCAATATAAGTGAAAAGCTTGTAACTTGCTCTCAGCTGAGTGAGCTTGATTTGTCATCTACTTCAATGACTGAACTGTCTAAAGGCTCGATTCGACTGATGAAGCAACTGAGTTCCCTAAATTTAAAGAATAACTTCCTCGCCAAGGTGCCAGATGACATTCggactctctcctctctcaagATCCTAAATATTGGTGTCAATGCTATTTCTGAGTTGAGCTGTGAGGATTTCACAAACACAACGCGCCTCAGAGAGCTTCATCTGCACAACAACCACATTGCCAAACTGGACAGATGTGTCTTTGAAAGTCTTAATGACCTGAAGATTTTAGATATGAGCGACAACCTGCTGTGGACATTCGGAGACGCCTTCAAAATAGGCCTGAAGAAGCTTGAGTTCTTGGATCTGAGCAACAACTTTGTACTTCTTCTTGATAAGGGGGATTTTCAAAGTTTAGGGTCCTTAAAATATTTGGATGTGGTGTCAAAACATATCTGGAGCGTGACACATAAGGCTTTCGATGGATTGAATAACCTGCGTAACCTAAGTGTATCTCTTCCATTtgaatttgaaaataaattcagAGGTTTACAGCAGTTGGAAAATCTTACAATTTACTTCATTAGTGACAGTTTCAAAGGTCCTCAACCAAACAATTATAAAgctttatttcatttaaaatccATGACATTTCTCACAGTAATATGCAAGGGTTTTCCCCTTGAGATACCAGAAATTCTCCAGGCTATGAAACATTTAGAAGACTTCACAGCTGAGAATTTCTTCATTTCTGGACCAGATGTGGACACTTTTCAATACAATCGCCAGCTTAAAAGTTTGACAATCAGACGGACTGATCTGTCCGACTTGGATCCTAGACTGTTTCAGCCAATGCCGCTCCTGCAGGTCCTTGATTTCTCCGAAACTAAGATAAAGTCTTTGGACTTTCTGTTCCAGGCTGATCTATATGCACTCAGATGTTTGAAACTAAGTGACAATGAGATAACTGTGATCAATGAGACGGTCTTCCAATTTCTCCCTGCACTAACATACCTCGATGTGGAAAACAACCCTTTTACTTGTGACTGCTCTAACGCCGGCTTTATCCAATGGGTGAAGAACAACAACCAAACTCAGGTTGTTAACGCCTACCAATACACATGTTCCTTCCCTGTGGCTGAACAAGGAAACAAGCTTCTGGACTTTGACATCCTGTCCTGTTGGATGGACGTTAGCTTCCTCTGCTTCATTTCCAGCACGTGCCTGGTTGTTTTTACACTCCTCGCATCCTTCATCTACCACTTTCTGAGGTGGCAGCTAGCCTATGCCTACCACCTTTTCCTGGCCTTTCTATATGACAGCAGGAAGAGAAAGGCGGGAGCTTGTCATCTGTATGACGCCTTCATCTCCTACAATGTTGACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAGGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAACCAGGGAAACCGATCGTAGAGAACATCATAGATGCCATATATGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGCTTCCGTCTGTTCGACGAACAGAAAGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAGCTGTCTCCTTACTACCGCATGAGGAAGCTGGTGAAGAAACGCACCTACCTGAGTTGGCCCAAGGCCGGCCATCACACGGGAGTCTTCTGGCAGAACGTAGGGAGAGCTCTTGAGACGGGGGACGCTCCCACCGAGACCGCTGACCTGCTCACTGGACCGGCAGGACGCTGAAAAACATAAGTtggaaaaaagctaca

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186657 False 318 TUCP 0.54 3 34564572 34573207
XM_039820875.1 True 2985 mRNA 0.45 3 34562075 34573377
XM_039820876.1 False 2371 mRNA 0.45 6 34540077 34573377

Neighbor

gene id symbol gene type direction distance location
LOC120571790 LOC103369207 coding upstream 3607 34524270 ~ 34536470 (+)
LOC120571787 NA coding upstream 18687 34513837 ~ 34521390 (+)
LOC120570953 NA coding upstream 111987 34413357 ~ 34428090 (+)
LOC120571619 NA coding upstream 351652 34180802 ~ 34188425 (+)
LOC120571616 NA coding upstream 378021 34157845 ~ 34162056 (+)
LOC120571785 NA coding downstream 5080 34578457 ~ 34589114 (+)
LOC120571789 NA coding downstream 29330 34602707 ~ 34608729 (+)
LOC120571600 NA coding downstream 56667 34630044 ~ 34638294 (+)
LOC120571392 NA coding downstream 69454 34642831 ~ 34649286 (+)
LOC120570955 NA coding downstream 101288 34674665 ~ 34683726 (+)
G138510 NA non-coding upstream 78138 34461681 ~ 34461939 (+)
G138477 NA non-coding upstream 86314 34445122 ~ 34453763 (+)
G138465 NA non-coding upstream 230546 34308579 ~ 34309531 (+)
G138456 NA non-coding upstream 333345 34206319 ~ 34206732 (+)
G138454 NA non-coding upstream 336342 34202931 ~ 34203735 (+)
LOC120571427 NA non-coding downstream 247028 34820405 ~ 34824367 (+)
LOC120571431 NA non-coding downstream 310918 34884295 ~ 34887973 (+)
G138586 NA non-coding downstream 383506 34956883 ~ 35006398 (+)
G138599 NA non-coding downstream 457637 35031014 ~ 35031789 (+)
G138646 NA non-coding downstream 555528 35128905 ~ 35129153 (+)
LOC120571618 NA other upstream 361531 34163590 ~ 34178546 (+)
G138322 NA other upstream 541388 33539115 ~ 33998689 (+)
LOC120572047 NA other upstream 567634 33755237 ~ 33972443 (+)
LOC120572044 NA other upstream 593114 33890732 ~ 33946963 (+)
LOC120572054 deptor other upstream 666783 33861199 ~ 33873294 (+)
LOC120570959 NA other downstream 666918 35240295 ~ 35290255 (+)
mllt11 NA other downstream 725910 35299287 ~ 35316864 (+)
LOC120570961 NA other downstream 798590 35371967 ~ 35377206 (+)
mindy1 fam63a other downstream 805462 35378839 ~ 35444328 (+)
LOC120571398 NA other downstream 830059 35403436 ~ 35517319 (+)

Expression


Co-expression Network