G138726 (LOC101480093)


Basic Information

Item Value
gene id G138726
gene name LOC101480093
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35808155 ~ 35837140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU186921
ATTGTAACAACAACAGTTATACATTTTGGTCCAACAATGTCCAATCTCCCGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagcccctctatgctggactaacggtttatggttATGGAtcctctgctgagttgtgtaaactgaaatagacagaagtcatttaagggttaaattctgtcattctgacacatttatttatttaaaaaaggaaaacttctctaaattgcagcttgttaaatgagaatattttctGGTTCCTTCAC

Function

NR:

description
tripartite motif-containing protein 16 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186921 True 353 lncRNA 0.41 2 35808155 35837140

Neighbor

gene id symbol gene type direction distance location
LOC120571424 LOC106633724 coding upstream 292373 35515121 ~ 35515782 (+)
LOC120571395 NA coding upstream 340985 35447774 ~ 35467170 (+)
LOC120571399 NA coding upstream 348546 35457547 ~ 35459609 (+)
LOC120570960 LOC106675582 coding upstream 466388 35341072 ~ 35341767 (+)
LOC120571423 fam63a coding upstream 471734 35332912 ~ 35336421 (+)
LOC120570967 LOC106675582 coding downstream 116715 35953855 ~ 35955159 (+)
LOC120571435 NA coding downstream 119277 35956417 ~ 35958468 (+)
riok1 riok1 coding downstream 142753 35979893 ~ 36004234 (+)
LOC120570972 NA coding downstream 311381 36148521 ~ 36153226 (+)
LOC120571441 NA coding downstream 358210 36195350 ~ 36256121 (+)
G138743 NA non-coding upstream 25512 35753521 ~ 35782643 (+)
G138807 NA non-coding upstream 33436 35707122 ~ 35774719 (+)
G138718 NA non-coding upstream 45968 35727961 ~ 35762187 (+)
G138801 NA non-coding upstream 67267 35686719 ~ 35740888 (+)
G138808 NA non-coding upstream 77928 35708748 ~ 35730227 (+)
G138680 NA non-coding downstream 39 35837179 ~ 35933836 (+)
G138679 NA non-coding downstream 89184 35926324 ~ 35986581 (+)
G138819 NA non-coding downstream 123193 35960333 ~ 35996309 (+)
G138821 NA non-coding downstream 131454 35968594 ~ 35968983 (+)
G138817 NA non-coding downstream 134697 35971837 ~ 35998150 (+)
G138806 NA other upstream 83753 35706900 ~ 35724402 (+)
LOC120570963 fam63a,LOC107589430 other upstream 193590 35518916 ~ 35614565 (+)
LOC120570962 LOC106676000,LOC106675582 other upstream 257000 35496877 ~ 35551155 (+)
LOC120571400 LOC106675582,LOC106676976,LOC106675585,LOC101480093 other upstream 291538 35439347 ~ 35516617 (+)
G138692 LOC106676976,LOC106675582 other upstream 310537 35439291 ~ 35497618 (+)
LOC120571445 LOC106675582,LOC106676976 other downstream 172847 36009987 ~ 36104537 (+)
G138676 NA other downstream 228231 36065371 ~ 36257319 (+)
LOC120571442 LOC106675582,LOC106676446 other downstream 269577 36106717 ~ 36215827 (+)
G138711 LOC106675582,LOC106676000 other downstream 301007 36138147 ~ 36215671 (+)
G138693 NA other downstream 392190 36229330 ~ 36247084 (+)

Expression


Co-expression Network