LOC120571400 (LOC106675582,LOC106676976,LOC106675585,LOC101480093)


Basic Information

Item Value
gene id LOC120571400
gene name LOC106675582,LOC106676976,LOC106675585,LOC101480093
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35439347 ~ 35516617 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU186927
CGGCTGCAGAAGAAAggactgagaggcagaaaaagcTTGAGGTGAGTCGACAgaccatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggAGGCCATCGATCGCGCCGCcgataaagcagtggaggacagcgagaagatcttcaccgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagggaagagagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagaggggagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgTGACAGTGGCCGTGTCAGAAGTTagagataaactacaggacgtCCTGAGAGAGGAGTGGACAAATgtctcactgacagggactgaagtggacgttttactgccacaaccagagcctaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagcacacacatatctgttattatctgaggggaacaggaaagcaacatTAATGAGACAACAACAGtcttattctagtcacccagacagattcactgACAGGTggcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagaggaggagttgATGTAGCAGTCGatacaagaatatcagcagagcagggtGGTCGG
>XM_039820333.1
atggcgaagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctggatctactgaaggatccgggGACTATTAactgtggacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATCGTAAGTACAACTACAGCTGCCCTGAGTGCAGGAAGACgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgggagaaaactcaaagcaCACAAGTCCTGTCTGCAATGTCTGGCTTGTTTCTGTGAGAAACACCTTCAGCTTCATTATGAATCAGAGACAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctCGTCACGATGAGGTAATGAAAATTTTCTGTCGTACCgatcagcagcttatctgttatctctgcttaatGGACAAACATAAAGGCCATGATACAGTCTCGGCTGCAGAAGAAAggactgagaggcagaaaaagcTTGAGGTGAGTCGACAgaccatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggAGGCCATCGATCGCGCCGCcgataaagcagtggaggacagcgagaagatcttcaccgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagggaagagagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagaggggagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgTGACAGTGGCCGTGTCAGAAGTTagagataaactacaggacgtCCTGAGAGAGGAGTGGACAAATgtctcactgacagggactgaagtggacgttttactgccacaaccagagcctaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaacacagcacacacatatctgttattatctgaggggaacaggaaagcaacatTAATGAGACAACAACAGtcttattctagtcacccagacagattcactgACAGGTggcaggtcctgagtagagagggtctgactggacgttgttactgggaggtggagaggagaggaggagtttttgtagcagtcgcatacaagaatatcagcagaACAGGGGGGTCGGATGAATGTAGATTTGGACAAAATTACAAATCTTGGGTGTTAGATTGTACcaacaacaaatatacattttggTCCAACAAAGTCCGAACTCCTGTCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagtgtttctgaaaccatgactctcctccacagagtccagaccacattcactcagcccctCTATGCTGGACTTTGGGTTTATTGTTCTGGAgcctctgctgagttgtgtaaactgaaatagacagaagtcattta

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186927 False 821 lncRNA 0.51 2 35439909 35516617
XM_039820333.1 True 1679 mRNA 0.48 1 35439347 35441025

Neighbor

gene id symbol gene type direction distance location
LOC120570960 LOC106675582 coding upstream 97580 35341072 ~ 35341767 (+)
LOC120571423 fam63a coding upstream 102926 35332912 ~ 35336421 (+)
LOC120571418 NA coding upstream 112332 35317578 ~ 35327015 (+)
LOC120571393 NA coding upstream 225035 35197333 ~ 35214312 (+)
si:ch211-133n4.6 NA coding upstream 261988 35161800 ~ 35177359 (+)
LOC120570967 LOC106675582 coding downstream 437238 35953855 ~ 35955159 (+)
LOC120571435 NA coding downstream 439800 35956417 ~ 35958468 (+)
riok1 riok1 coding downstream 463276 35979893 ~ 36004234 (+)
LOC120570972 NA coding downstream 631904 36148521 ~ 36153226 (+)
LOC120571441 NA coding downstream 678733 36195350 ~ 36256121 (+)
G138670 NA non-coding upstream 50094 35326329 ~ 35389253 (+)
G138721 NA non-coding upstream 65775 35337133 ~ 35373572 (+)
G138772 NA non-coding upstream 82869 35347032 ~ 35356478 (+)
G138770 NA non-coding upstream 89775 35339432 ~ 35349572 (+)
G138769 NA non-coding upstream 117093 35321925 ~ 35322254 (+)
G138748 LOC106676976 non-coding downstream 34152 35550769 ~ 36011779 (+)
G138719 NA non-coding downstream 42096 35558713 ~ 35566787 (+)
G138725 NA non-coding downstream 100043 35616660 ~ 35704687 (+)
G138795 NA non-coding downstream 117820 35634437 ~ 35635272 (+)
G138799 NA non-coding downstream 148478 35665095 ~ 35665716 (+)
LOC120570961 NA other upstream 62141 35371967 ~ 35377206 (+)
mllt11 NA other upstream 122483 35299287 ~ 35316864 (+)
LOC120570959 NA other upstream 149092 35240295 ~ 35290255 (+)
LOC120571788 LOC103147980,LOC106964283,LOC107396830,LOC103369207 other upstream 865970 34540077 ~ 34573377 (+)
LOC120571618 NA other upstream 1260801 34163590 ~ 34178546 (+)
LOC120570963 fam63a,LOC107589430 other downstream 2299 35518916 ~ 35614565 (+)
G138806 NA other downstream 190283 35706900 ~ 35724402 (+)
LOC120571439 LOC106675582 other downstream 286687 35803304 ~ 35818966 (+)
LOC120571445 LOC106675582,LOC106676976 other downstream 493370 36009987 ~ 36104537 (+)
G138676 NA other downstream 548754 36065371 ~ 36257319 (+)

Expression


Co-expression Network