LOC120571442 (LOC106675582,LOC106676446)


Basic Information

Item Value
gene id LOC120571442
gene name LOC106675582,LOC106676446
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36106717 ~ 36215827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU186931
agtcactatttagagtttgtgtcagctaaagacggcagtattaagAGCTACAGTTTGCAGATGGGTGTAACCAACATGCTGGGGGAAGTACAACAGCGTATCACCTGTTATTACATCAGAGCTCAGACTAGATTCATTTCTCAGGAAGTGAGactcagacagtcagacagtcgtagtcactgagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctagatctactgaaggatccggtggctattccctgtggacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATTATAAGTACAACTACAGCTGCCCTGAGTGCAGGAAGACgttcacaccgaggcctgtactggtgaaaaacaccatgttagcagctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACACCTTCAGCTTCATTACGAATCAGCTCCAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgagGTAATGAAGATTTTCTGTcgtactgatcagcagcttatctgttatctctgcttaatGGACAAACATAAAGGCG
>TU187089
gagatatgctggctctatacacactaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtgtagtttggtgatggtggtttcggggctgtttcatgttaaactaaaaggatcttactctttaactaaaaggtctatctctgtagggatccatcccataatgttgtcagacacttagaataataatctgagtctgtcagaacGTTTAGTGGACGCTGAAAGGGTCCAGATTGAAACCTAGCGAAGGTCCCCTTTAATATCTGGTGTTTTCAGAGTCCAGAGGTGGTGGCTTCTGTGGGGAAACTGAGCTACAACCAGCTGGTGGAGAAAATCATCGACTACAAACACTCAGCAGACAGCAGCCGAGTCAgtgaaggtctgtgtttctctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_039820384.1
AAACAAGTGTTGCTGCGTTCCTTATACCATACTTTCTCTTCGGGACATAAAACTCTGAGATAAAATCGCAGCTTGAACTTTGAGCCTCTTGCTCAGATATGCTGCACAGAGGATTGTGGGTCAGAAAAGCACGCTGGCTCGTATACTGCAAAATGCAACCGGGTGCATCAGGACACATTTTAGGCATTCTGCATTTGACATTATATGTATTGGGATATACTATATCTTTCCGTGTCATACTAATGGTAGTATGGGCATTGCAACAcacccagtctctctctcaaagcGCTCCTCTTCCAGGAATGAAGCAGAACTTGataacccctccctcctcttcctctcaaaCACAGCCAGCTCCACTTGTGCACATATTTCCTTGTTCCCTCCCCTTCAGAGCTACAGTTTGCAGATGGGTGTAACCAACATGCTGGGGGAAGTACAACAGCGTATCACCTGTTATTACATCAGAGCTCAGACTAGATTCATTTCTCAGGAAGTGAGactcagacagtcagacagtcgtagtcactgagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctagatctactgaaggatccggtggctattccctgtggacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATTATAAGTACAACTACAGCTGCCCTGAGTGCAGGAAGACgttcacaccgaggcctgtactggtgaaaaacaccatgttagcagctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACACCTTCAGCTTCATTACGAATCAGCTCCAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtaatgaagattttctgccgtactgatcaacagcttatctgttatctctgcttaatGGACAAACATAAAGGCCACGATACAGTCTCGGCTGCAGAAGAAAGGATTGAGAGGCAGAAAAAGCTCGAGGGGAGTCGACAgaccatccagcagagaatccaggacagagagaaagatgtgaagctgcttcaacagcaggcggAGGCCATCGATCGCGCCGCcgataaagcagtggaggacagcgagaagatcttcaccgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagggaagagagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagagggaagacgctgagctgaagaagctctcacacacagaggatcacagccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagcatccatatccgtcctctgagctgctttgaggacgtgacagcggccgtgtcagaagtcagagataaactacaggacgtcctgagagaggagtggacaaacgtctcactgacagggactgaagtggacgttttactgccacaaccagagcccaagaccagagctggattcttaaaatattcacgtgacatcacactggatccaaacacagcaaacacacagctgttattatctgaggggaacaggaaagcaacatTCATGAGTCAACAACAGtcttattctagtcacccagacagattcactgGCTGGTAccaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagaggaggagtttatgtagcagtcgcatacaagaatatcagcagagcagggaGGTCGGAGGAATGTGGATTTGGACGaaatgacaaatcttgggcGTTAGATtgtgacaacaacaaatatacattttggtccaacaaagtccaaactcccgtctcaggtcctgggtcctccagagtaggagtgtacctggatcacagtgcagAGTCCAGAGGTGGTGGCTTCTGTGGGGAAACTGAGCTACAACCAGCTGGTGGAGAAAATCATCGACTACAAACACTCAGCAGACAGCAGCCGAGTCAgtgaaggTCTGGTAGCAGAGCAGTTCCTAGAGTCCACAGCGACCCAGCTCTCCTATCAG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186931 False 745 TUCP 0.47 3 36106717 36215827
TU187089 False 469 lncRNA 0.44 2 36193716 36194428
XM_039820384.1 True 2228 mRNA 0.49 3 36189675 36195349

Neighbor

gene id symbol gene type direction distance location
riok1 riok1 coding upstream 102483 35979893 ~ 36004234 (+)
LOC120571435 NA coding upstream 148249 35956417 ~ 35958468 (+)
LOC120570967 LOC106675582 coding upstream 151558 35953855 ~ 35955159 (+)
LOC120571424 LOC106633724 coding upstream 590935 35515121 ~ 35515782 (+)
LOC120571399 NA coding upstream 647108 35457547 ~ 35459609 (+)
LOC120570973 NA coding downstream 59086 36274913 ~ 36277816 (+)
LOC120571542 NA coding downstream 66456 36282283 ~ 36292736 (+)
LOC120571543 NA coding downstream 90823 36306650 ~ 36317353 (+)
LOC120570974 NA coding downstream 111859 36327686 ~ 36335190 (+)
anp32e anp32e,LOC103368512 coding downstream 146498 36362325 ~ 36372221 (+)
G138754 NA non-coding upstream 482 36105817 ~ 36106235 (+)
G138702 NA non-coding upstream 55563 36039527 ~ 36051154 (+)
G138825 NA non-coding upstream 69898 36036407 ~ 36036819 (+)
G138824 NA non-coding upstream 103141 36002916 ~ 36003576 (+)
G138817 NA non-coding upstream 108567 35971837 ~ 35998150 (+)
G138731 LOC106675582 non-coding downstream 13291 36229118 ~ 36246720 (+)
G138755 NA non-coding downstream 19843 36235670 ~ 36249048 (+)
G138837 NA non-coding downstream 41710 36257537 ~ 36257811 (+)
G138838 NA non-coding downstream 42205 36258032 ~ 36258966 (+)
G138842 NA non-coding downstream 58605 36274432 ~ 36290718 (+)
LOC120571445 LOC106675582,LOC106676976 other upstream 2180 36009987 ~ 36104537 (+)
LOC120571439 LOC106675582 other upstream 287751 35803304 ~ 35818966 (+)
G138806 NA other upstream 382315 35706900 ~ 35724402 (+)
LOC120570963 fam63a,LOC107589430 other upstream 492152 35518916 ~ 35614565 (+)
LOC120570962 LOC106676000,LOC106675582 other upstream 555562 35496877 ~ 35551155 (+)
G138693 NA other downstream 13503 36229330 ~ 36247084 (+)
gabpb2a gabpb2,LOC102789669 other downstream 122569 36338396 ~ 36354102 (+)
G138883 NA other downstream 277276 36493103 ~ 36505934 (+)
G138668 NA other downstream 296779 36512606 ~ 36516582 (+)
LOC120571613 NA other downstream 310702 36526529 ~ 36532535 (+)

Expression


Co-expression Network