LOC120571398


Basic Information

Item Value
gene id LOC120571398
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35403436 ~ 35517319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU186996
agtcattgtttttatttaaaaaaaggaaaacttctctaaattgcagcttgttaaatgagaatattttctGGTTCCTTCACTCCTCGAggcttttttctgcattttgatgcttttttaattttttgactCATTCAAGACTTTTGTTGATgatttttgatacattttcaatgtttatttTACGGTGGTTTTTATTGAAAGCTTTTTGACGctcactacaacacacacacacacgtggaaacacacacacacacacacacacacacagacacacacacacacatggacacacacacatggacacacacacacactgacacacacggacacacacacacacacacacacagatgaaaacacacacacacacacacacaca
>TU186997
caagacttttgttgatgctttttgatacattttcaatgttTTTTATTGAAAGCTTTTTGACGctcactacaacacacacacacacgtggaaacacacacacacacacacacacacacagacacacacacacacatggacacacacacatggacacacacacacactgacacacacggacacacacacacacacacacacagatgaaaacacacacacacacacacacaca
>XM_039820331.1
AGACAGTAAGACAGTCGTTGTCACTGagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttctatctgtctggatctaatgaaggatccggtgactattaactgtggacacagctactgcatgaactgtattaaaagtCACTGGGATGAAGAGGATTGTAAGTACAGCTACAGCTGCCCTGAGTGCAGGAAGATgttcacaccgaggcctgtcctgctgaaaaacaccatgttggcagctttagtggaggagctgaagaagactggactccaatctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGCAATGTCTGGTCTCTTATTGTGAGAAACACCTTCAGCCTCATTACGATGTAGCTCAgttaaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtaatgaagatgttctgccgtaatgatcagcagcttatctgttatctctgctccGTGGACgaacataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagaaaaagcTCGAGGTGAGTCGACAgaccatccagcagagaatccaggacagagagaaagatgtgaagctgcttcgACAGCAGGCGGAGGCCATCGATCGCGCCGCcgataaagcagtggaggacagcgagaagatcttcaccgagctgatccgtctcctggagaaaagaagctctgatgtgaagcagcaggtcagatcccagcagaaaagggaagagagtcgagtcagagagcttcaggaggagctggagcaggagatcactgagctgaagagggaagatgctgagctgaagaagctctcacacacagaggatcacagccagtttctacacaactacccctcactgtcaccactcagccaatcagcatccagAATCCATATCCGTCCTCTTAGCTGCTTTGAGGACGTGACAGCGGCagtgtcagaagtcagagataaactacaggacgtcctgagagagaagaggacaaaagtctcactgacagggactgaagtggacgttttactgccacaaccagagcccaagaccagagctggattcttaaaatattcacgtgaaatcacactggatccaaatACAGCAAACACACGgctgttattatctgaggggaacaggaaagcaacaGTCATGAGACAACATCAGtcttattctagtcacccagacagattcactgACTGGTgtcaggtcctgagtagagagagtctgactggacgttgttactgggaggtggagaggagaggaggagtttatgtagcagtcgcatacaagaatatcagcagagAAGGGGGGTCGGATGAATGTGGATTTGGACGAAATGACAAATCTTGGATGTTAGATTGTTACAACAACAGTTATACATGTTGGTCCAACAATGTCCAAACTCCCGTCTCAGGTCCTgtgtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaacgatgactctcctccacagagtccagaccacattcactcagcccctCTATGCTGGACTAATGCTTTATGGTTCTTATGGAgactctgctgagttgtgtaaactgaaatagacagaagtcatttaGGGGTTAAATTCTGTCATTctgagtcatttatttatttaaaaaaaggaaaacttctctaaattgcagcttgttaaatgagaatattttctGGTTCCTTCACTCCTCGAggcttttttctgcattttgatgcttttttaattttttgactCATTCAAGACTTTTGTTGATgatttttgatacattttcaatgtttatttTACGGTGGTTTTTATTGAAAGCTTTTTGTTACTCGCTTgctacaacaaacacacacacacacacacacacacacacggacacacactcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186996 False 376 lncRNA 0.38 2 35422176 35517319
TU186997 False 230 lncRNA 0.43 2 35498818 35517319
XM_039820331.1 True 2009 mRNA 0.47 2 35403436 35422442

Neighbor

gene id symbol gene type direction distance location
LOC120570960 LOC106675582 coding upstream 61669 35341072 ~ 35341767 (+)
LOC120571423 fam63a coding upstream 67015 35332912 ~ 35336421 (+)
LOC120571418 NA coding upstream 76421 35317578 ~ 35327015 (+)
LOC120571393 NA coding upstream 189124 35197333 ~ 35214312 (+)
si:ch211-133n4.6 NA coding upstream 226077 35161800 ~ 35177359 (+)
LOC120570967 LOC106675582 coding downstream 436536 35953855 ~ 35955159 (+)
LOC120571435 NA coding downstream 439098 35956417 ~ 35958468 (+)
riok1 riok1 coding downstream 462574 35979893 ~ 36004234 (+)
LOC120570972 NA coding downstream 631202 36148521 ~ 36153226 (+)
LOC120571441 NA coding downstream 678031 36195350 ~ 36256121 (+)
G138670 NA non-coding upstream 14183 35326329 ~ 35389253 (+)
G138721 NA non-coding upstream 29864 35337133 ~ 35373572 (+)
G138772 NA non-coding upstream 46958 35347032 ~ 35356478 (+)
G138770 NA non-coding upstream 53864 35339432 ~ 35349572 (+)
G138769 NA non-coding upstream 81182 35321925 ~ 35322254 (+)
G138748 LOC106676976 non-coding downstream 33450 35550769 ~ 36011779 (+)
G138719 NA non-coding downstream 41394 35558713 ~ 35566787 (+)
G138725 NA non-coding downstream 99341 35616660 ~ 35704687 (+)
G138795 NA non-coding downstream 117118 35634437 ~ 35635272 (+)
G138799 NA non-coding downstream 147776 35665095 ~ 35665716 (+)
LOC120570961 NA other upstream 26230 35371967 ~ 35377206 (+)
mllt11 NA other upstream 86572 35299287 ~ 35316864 (+)
LOC120570959 NA other upstream 113181 35240295 ~ 35290255 (+)
LOC120571788 LOC103147980,LOC106964283,LOC107396830,LOC103369207 other upstream 830059 34540077 ~ 34573377 (+)
LOC120571618 NA other upstream 1224890 34163590 ~ 34178546 (+)
LOC120570963 fam63a,LOC107589430 other downstream 1597 35518916 ~ 35614565 (+)
G138806 NA other downstream 189581 35706900 ~ 35724402 (+)
LOC120571439 LOC106675582 other downstream 285985 35803304 ~ 35818966 (+)
LOC120571445 LOC106675582,LOC106676976 other downstream 492668 36009987 ~ 36104537 (+)
G138676 NA other downstream 548052 36065371 ~ 36257319 (+)

Expression


Co-expression Network