G138829 (LOC101480093,LOC101481809)


Basic Information

Item Value
gene id G138829
gene name LOC101480093,LOC101481809
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36105065 ~ 36153414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU187085
tTTGCATTACTTTAGTTTGACTttgcaggtagcttgtgaatttcaccaccagatcaataaagtctcatctttgtcaactttaatacatcataacaagagttctctcaagacactttacaaatagagtagatttggacaaaatgacaaatcttgggcgttagattgtaacaacaacaaatatacattttggTCCAACAAAGTCCAAACTCCCGTCTCAGgtcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagcccctCTATGCTGGAC

Function

NR:

description
tripartite motif-containing protein 16 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187085 True 350 lncRNA 0.42 2 36105065 36153414

Neighbor

gene id symbol gene type direction distance location
riok1 riok1 coding upstream 100831 35979893 ~ 36004234 (+)
LOC120571435 NA coding upstream 146597 35956417 ~ 35958468 (+)
LOC120570967 LOC106675582 coding upstream 149906 35953855 ~ 35955159 (+)
LOC120571424 LOC106633724 coding upstream 589283 35515121 ~ 35515782 (+)
LOC120571399 NA coding upstream 645456 35457547 ~ 35459609 (+)
LOC120571441 NA coding downstream 41936 36195350 ~ 36256121 (+)
LOC120570973 NA coding downstream 121499 36274913 ~ 36277816 (+)
LOC120571542 NA coding downstream 128869 36282283 ~ 36292736 (+)
LOC120571543 NA coding downstream 153236 36306650 ~ 36317353 (+)
LOC120570974 NA coding downstream 174272 36327686 ~ 36335190 (+)
G138702 NA non-coding upstream 53911 36039527 ~ 36051154 (+)
G138825 NA non-coding upstream 68246 36036407 ~ 36036819 (+)
G138824 NA non-coding upstream 101489 36002916 ~ 36003576 (+)
G138817 NA non-coding upstream 106915 35971837 ~ 35998150 (+)
G138831 NA non-coding downstream 1049 36154463 ~ 36195924 (+)
G138684 NA non-coding downstream 30623 36184037 ~ 36193304 (+)
G138731 LOC106675582 non-coding downstream 75704 36229118 ~ 36246720 (+)
G138755 NA non-coding downstream 82256 36235670 ~ 36249048 (+)
G138837 NA non-coding downstream 104123 36257537 ~ 36257811 (+)
LOC120571445 LOC106675582,LOC106676976 other upstream 528 36009987 ~ 36104537 (+)
LOC120571439 LOC106675582 other upstream 286099 35803304 ~ 35818966 (+)
G138806 NA other upstream 380663 35706900 ~ 35724402 (+)
LOC120570963 fam63a,LOC107589430 other upstream 490500 35518916 ~ 35614565 (+)
LOC120570962 LOC106676000,LOC106675582 other upstream 553910 35496877 ~ 35551155 (+)
G138693 NA other downstream 75916 36229330 ~ 36247084 (+)
gabpb2a gabpb2,LOC102789669 other downstream 184982 36338396 ~ 36354102 (+)
G138883 NA other downstream 339689 36493103 ~ 36505934 (+)
G138668 NA other downstream 359192 36512606 ~ 36516582 (+)
LOC120571613 NA other downstream 373115 36526529 ~ 36532535 (+)

Expression


Co-expression Network