G139596 (LOC104963332,LOC104948352,LOC104953734,LOC104942256)


Basic Information

Item Value
gene id G139596
gene name LOC104963332,LOC104948352,LOC104953734,LOC104942256
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38808850 ~ 38918553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU188298
TTCACTCCATGCGGatttatttgttacattttaacaaacaaaatcaaattttCATGACTCTCTTCTTTTAGAGCGTTTTGGGTGGTGTCAGATGCACACATTCACGCCCACAGTTACCTCGTGTTGGTTACATCTTAAGATGGACCTGAACTGGTGATATCTTTACTTCTAACAGTCCTCTCATCTTCCTTTTCTTAAGTACACCTAGGTCGTTGTGACCCAGACAATAACTACTAACGTACATGCTAGTCAACAGATGGTTTACTTCAAATGATTTCACTTTATTTCATCCTGGAGGGTACTCAGCATGTCCTGGTGTACCACACCGGTCATATCGATTATTACATATCGGTCATATAACGATTATATTTCTTTACTTCATTAGCTTTACCATGGCCTAATTAGTGGCATAGGAGACACTATACATGTCAAAAGACCTTAATCATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGAAACACCGTGCTAGGCTAACTTCCCTATGCTACCTCCATCACATCTCCCTTGGTTAAACTAAAGATAGctttctggtcctccacagtcctctccatcagcttctgtttccatcagCCCAACACATTTATGTCTTTTGACATGAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgtCATGTGTGACCATAAATTTCCTCTCTCTGTAAAggatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTCGCCTGTGTGACTGTAAATGTgcactctgtgtaaaagatttcttacagactgagcagctgaaaggtttttctcctgtgtgagtttgCCTGTGTGACTGTAAATGTCCACTCTGTTtgaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTATCATGTGTGTCCGTAAATCTCCACTCTGtataaaagatttcttacagactgagcagctgaaaggtttttcaccTGTATGAGTTATCATGTGTGTCCGTAAATCTCCACTCTGtataaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGACgcatcatgtgtctcttcagggTTCCACTTTCAGAGAAAGCTctaccacactcagagcagctgaaaggtttttctcctgtgtgagttctcatgtgtctcCTCAGGTGTGGCTTGGTGGAAAATCTGTTCCCACattcagagcagctgaatgttttcttacatcttgaatcatgtttcaaagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcattttcaggttcagaagagtctccagtctggtgttcagtctctggttgtaaaagtggatgtaagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgcaccacagttcctcctgttcctctttaatgtgtggggggggctctgggtcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgcttaacatct
>TU188300
TTCACTCCATGCGGatttatttgttacattttaacaaacaaaatcaaattttCATGACTCTCTTCTTTTAGAGCGTTTTGGGTGGTGTCAGATGCACACATTCACGCCCACAGTTACCTCGTGTTGGTTACATCTTAAGATGGACCTGAACTGGTGATATCTTTACTTCTAACAGTCCTCTCATCTTCCTTTTCTTAAGTACACCTAGGTCGTTGTGACCCAGACAATAACTACTAACGTACATGCTAGTCAACAGATGGTTTACTTCAAATGATTTCACTTTATTTCATCCTGGAGGGTACTCAGCATGTCCTGGTGTACCACACCGGTCATATCGATTATTACATATCGGTCATATAACGATTATATTTCTTTACTTCATTAGCTTTACCATGGCCTAATTAGTGGCATAGGAGACACTATACATGTCAAAAGACCTTAATCATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGAAACACCGTGCTAGGCTAACTTCCCTATGCTACCTCCATCACATCTCCCTTGGTTAAACTAAAGATAGctttctggtcctccacagtcctctccatcagcttctgtttccatcagCCCAACACATTTATGTCTTTTGACATGAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgtCATGTGTGACCATAAATTTCCTCTCTCTGTAAAggatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTCGCCTGTGTGACTGTAAATGTgcactctgtgtaaaagatttcttacagactgagcagctgaaaggtttttctcatGTGTGAGTTCGCCTGTGTGACTGTAAATGTGCACTTTGTGTAAAAgttttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTTTCATGTGTTTCCGTAAATCTCCATTTcgtgtaaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTTTCATGTGTGTCCGTAAATCTCCACTCTGtaaaaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTTTCATGTGTTTCCGTAAATCTCCACTTCGTGtgaaagatttcttacagactgagcagctgaaaggtttttcaccTGTATGAGTTATCATGTGTGTCCGTAAATCTCCACTCTGtataaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGACgcatcatgtgtctcttcagggTTCCACTTTCAGAGAAAGCTctaccacactcagagcagctgaaaggtttttctcctgtgtgagttctcatgtgtctcCTCAGGTGTGGCTTGGTGGAAAATCTGTTCCCACattcagagcagctgaatgttttcttacatcttgaatcatgtttcaaagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcattttcaggttcagaagagtctccagtctggtgttcagtctctggttgtaaaagtggatgtaagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgcaccacagttcctcctgttcctctttaatgtgtggggggggctctgggtcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgcttaacatct
>TU188301
TTCACTCCATGCGGatttatttgttacattttaacaaacaaaatcaaattttCATGACTCTCTTCTTTTAGAGCGTTTTGGGTGGTGTCAGATGCACACATTCACGCCCACAGTTACCTCGTGTTGGTTACATCTTAAGATGGACCTGAACTGGTGATATCTTTACTTCTAACAGTCCTCTCATCTTCCTTTTCTTAAGTACACCTAGGTCGTTGTGACCCAGACAATAACTACTAACGTACATGCTAGTCAACAGATGGTTTACTTCAAATGATTTCACTTTATTTCATCCTGGAGGGTACTCAGCATGTCCTGGTGTACCACACCGGTCATATCGATTATTACATATCGGTCATATAACGATTATATTTCTTTACTTCATTAGCTTTACCATGGCCTAATTAGTGGCATAGGAGACACTATACATGTCAAAAGACCTTAATCATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGAAACACCGTGCTAGGCTAACTTCCCTATGCTACCTCCATCACATCTCCCTTGGTTAAACTAAAGATAGctttctggtcctccacagtcctctccatcagcttctgtttccatcagCCCAACACATTTATGTCTTTTGACATGAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgtCATGTGTGACCATAAATTTCCTCTCTCTGTAAAggatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTCGCCTGTGTGACTGTAAATGTgcactctgtgtaaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTTTCATGTGCGTCCGTAAACCTCCTCTCgctgtaaaagatttcttacagactaagcagctgaaaggtttttctcctgtgtgagttctcatgtgtatCCGTAAATCTCCACTAcgtgtaaaagatttcttacagactgagcatctgaaaggtttttctcctgtgtgagtttgCCTGTGTGACTGTAAATGTCCACTCTGTTtgaaagatttcttacagactgagcagctgaaaggtttttctcctgtgtgagtttgCCTGTGTGACTGTAAATGTCCACTCTGTTtgaaagatttcttacagactgagcagctgaaaggtttttctccagaATGAGTCATCATGTGGTTCTTCAATGTTCTATTGTCAGTGAATGCtttaccacactcagagcagccaaaaggtttttctcctgtgtggattctcatgtgtttcttcAGATGTTCCTTGCGGCCAAATCTTCTCACACACTCAgaacagctgaatgttttcttacatcttaaatcatgtttcagagagtttaaagctgtctgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaacgtggatgtgagttcctggctggttctggtcctccacagtcttctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggcgggggctctggctcctgctggtccacactggagctacactcctgctgctcagggatAACCTCTCctttaaccaccaaca
>TU188302
cgaaaaccgtgaccctaaaaccatgatacgaaccgaaccgtgggttttatgaaccgtaccacccctagtaccCATCAAATGACCACGGCAAACAGTCCAGTGGACtttcaattcattttatttctatgcgAGGACACCATGAAGACTCCAGAGACTGTTGATATTCACTCCATGCTGatttatttgttacattttaacaaacaaaCCGAGCTTCCTCGGACACATCAACTGACCACCGGTGATAGTCAGTCCAATAGACAACTGAATCTAAGTTTCATATGACTCTCTTCTTATAAAACATTTTGGGCGGTGTCAGTTGGACACATTCACGCCCACAGTTACCTCATGTTGGTTACATCTTTAGATGGACCTGAACTGTTGATATTTTTACTTCTAACAGTCCTCTCATCTTCCTTTTCTTAAGTACACCTAGGTCGTTGTGACCCAGACAATAACTACTTATGTACATGCTAGTCAACAGATTGTTtacttcaaataatttcactgtatTTCATCCTGGAGGGTACTCAGCATGTCCTGGTGTACCACACCGGTCATTtcaaaaaattatatttctttACATTATTAGCTTTACCATGGCCTAATTAGTGGCATAGGAGACACTATACATGTCAAAAGAACTTAATCATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatatagAGCATAATATGTCCATCTCAGCTTTGCTTCAAAGACAAAACTCAGGAAACAAACATAGGTTacttaaggccgttttatgcttcTACGTTGAATCGACAATGTACCCCCACAGACCTATCTGCGTCTACGCCTGACCCTACGCCGCAGCCGGACATGCACGtctcaaaaaatttaactacacgttgCAGTGGCGTaggtcgctcggccgtggcttggtagcgttacATTTCCccagactcatttcctggttcatgcacacatgccggctcgagtaacacaccagcgcacaagtataaacatcaggccacttaaaGGCACAAACGTTATTCCATGTCACCAGTCTCAGgttcagaagagtctccagtctggtgttcagtctctggttgtaaaagtggatgtaagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgcaccacagttcctcctgttcctctttaatgtgtggggggggctctgggtcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgcttaacatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188298 False 1816 lncRNA 0.43 3 38808850 38833687
TU188300 True 1984 lncRNA 0.43 2 38808850 38833687
TU188301 False 1886 lncRNA 0.43 3 38808850 38918553
TU188302 False 1442 lncRNA 0.44 2 38831303 38833687

Neighbor

gene id symbol gene type direction distance location
LOC120571006 NA coding upstream 102520 38697721 ~ 38706330 (+)
LOC120571005 LOC104963332,LOC104953734 coding upstream 111295 38690978 ~ 38697555 (+)
LOC120571004 NA coding upstream 140906 38644958 ~ 38667944 (+)
LOC120571068 NA coding upstream 176837 38630789 ~ 38632013 (+)
LOC120571044 NA coding upstream 193969 38612597 ~ 38614881 (+)
LOC120571016 NA coding downstream 134646 39053199 ~ 39121788 (+)
LOC120571448 NA coding downstream 158163 39076716 ~ 39082222 (+)
LOC120571450 NA coding downstream 273032 39191585 ~ 39192174 (+)
G139793 LOC104963332,LOC104942256,LOC104953734,LOC104948352 non-coding upstream 65084 38740572 ~ 38743766 (+)
G139777 NA non-coding upstream 223241 38584615 ~ 38585609 (+)
LOC120571090 NA non-coding upstream 301837 38492940 ~ 38507013 (+)
LOC120571099 NA non-coding upstream 390443 38417967 ~ 38418407 (+)
LOC120571098 NA non-coding upstream 390924 38404304 ~ 38417926 (+)
G139825 NA non-coding downstream 8150 38926703 ~ 38926931 (+)
G139834 NA non-coding downstream 43110 38961663 ~ 39035152 (+)
G139835 NA non-coding downstream 59936 38978489 ~ 39077439 (+)
G139839 NA non-coding downstream 60488 38979041 ~ 38986014 (+)
G139843 NA non-coding downstream 76517 38995070 ~ 39008612 (+)
G139594 NA other upstream 214188 38593575 ~ 38594662 (+)
G139581 NA other upstream 378396 38426750 ~ 38430454 (+)
G139586 LOC104948352 other upstream 551884 37686538 ~ 38256966 (+)
LOC120570989 NA other upstream 1285718 37497634 ~ 37523132 (+)
G139164 NA other upstream 1362266 37443392 ~ 37446584 (+)
LOC120571012 cct3,LOC102778987,LOC105012686 other downstream 18193 38936746 ~ 38957569 (+)
G139838 NA other downstream 54157 38972710 ~ 38999473 (+)
G139845 LOC108246181 other downstream 93685 39012238 ~ 39015904 (+)
G139856 LOC108250349,LOC108249964 other downstream 136218 39054771 ~ 39208169 (+)
LOC120571018 NA other downstream 262282 39180835 ~ 39184528 (+)

Expression


Co-expression Network