G139601 (LOC104948352)


Basic Information

Item Value
gene id G139601
gene name LOC104948352
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38169161 ~ 38200294 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU188314
ccatcatatctagaagagctcatagtaccttattgccccactagatcactgcactcccagaatgcagagctacttgtggttcctagagtctctaaaagtagaatgggagccagagccttcagttaccAGGCTCCTCtactatggaaccagctcccagtctgggtttggggggcagacaccatcaccgcatttaagagtaaacttaaaaccctcctcttcgataaagcttatagttagggagtgaggagttgcagcatccACCTAACCCTGTCCCACCTGCTTCTCGTCATAATGGTCAGATTCCtctaccatataatcaataatataacaaaagtagagggagacagGCAAGTACAGCCCGATCAGGttgggagagttctagcccgaccaggctcctctcttTAACccgtctctcttagttatgctatatAACCTGCTGTTATTTAtaaccttctctctctttccatttgcttccatttgtgtgcatccttgtcccagaaatgcttgttactaaccttaCTAGTTACTAGTGTTActagtccttatgtttttttgtcacccagcatatttccttggattaggatggcaccaagatcttggttgcagctgttgccgtggtcctgctgcactccctgctacaccctgctgcatcctgctacatcccgctatgctctgctgtgccacgctacatcctgtaacgcacTGCAGTGCCCTTATACCCCccatgacatgaactactaccatttgtagtcactgttccattatctttactgtgactattattgccactgttcatcacacccccaaccgggaGGAAACACTTTTAACTTTACtatatctctttacatacatATTTTGTTCTACTACCATGGACTAACAGTTCGATAGTTTATTCTCAATAATAGTTTATTAGTTCTATAAAATGTGGATCATTGTTACGCTAAATATTTCAACTGTTCAGAAAGTACTTttagcagctgaatgttttcttacatcttgaatcatgtttcagagagtttaaatctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaacgTGGATcagagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtgggggggcctctggctcctgctggtccacactggagctacactcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgctcaacatctgcaggaaacagaatCAAAT
>TU188315
TGGACATGtaaaagctctgataaataaGAAGGcgacaacccatttaagatcttgaaaacaattaatacaattttaaattcaatcctgaaaCAAAAAGGAAACCAGTGGAGCGTGGCCAAAACCGGTGTAATGTTTTTGGTCCCGGTTAAAAGCTGAGCTGCTGTGTTCTGGACTAAGTGTAACCGACGAAGGGATGACTGATCCAATCCAACATACAAAGAGTTACAGTAGTCTAAACGGGACGTAATTAATGCATGTATGACTCTTTTGAAGTCTTTGCGTAGCAGAGACTGTGAtgttgttatggtgtggggaataaaggacccaaatgcaggcagaggcaggcaggagagGGGTTGAACACGAAGATTTATTgaaggacaaaaaaacaaaccaagggAGTCCTGTACGTTGCAGCAGGCAAAAAAACACTTCCAGAAACATCCAAAGAAATCCAAAAAACCAAGAAgtacaaaaaactgaaaacgcTCAAACTGACGGGAGCTGACACAGGCACATACAAACTGACAAAGACTAGCAGGGCAAGGACACAAACTGACTGGGTAAAGGCACAAGGACGCAAAAGGATCTGACCAGAGACAAGGGAAGCACAAGGACTAAATACACTGGGTAATGAGGTAACAAGGGGCAGGTGACacagcaggtgaaacacattaagagagacagggtaataaacaaaggcgggaaaacacaggaagtaaaactagactagacaagacagaaaaccacactatcaaaataaaacaggaaacagaaatatacaaaacaggaaacatacaaaataacaggcaacagaaatgtcTATAACCATCACAGATGTGAGCCATTTGGGAATAGCCTACGCATGAAAGTCAAAGTTGTGAGTGCATGCATGCCGAACTGTAGGGGCGGTCTGTTACTCTACATCACGGACAATTTATTcatcaatatttcaaaatagaaaatattacacttcataatgttttgtattcataacactattgtattattgtacaaattagctACAACAGTAATAGCAGTTACCTTATGTGAGTCActcctacatttttcaactgAAGAGCAAAACGTGCTCCTTGGGAAAAGTATACAGTTATGCCCTGTTCATACTAATCTAATGAACTGGACTTTGTTTTCAGATGCGAAAGCCCCCTTCCCTAATTTGAATGGTATAAAAATATTTGCAGTACAATTATTATAAGAGGTCTGCACCTCTTTCTGACCCCCACCCCGGGTCAGCTACCACCACAAATGGAATCTAATTCTGTGGGAAAAACtgacagtcctctccatcagcttccgTTTCCATcggaccaacacatttatgtctTTTGACATGAGAACGCCAGGCAAATCTTctgttacaaacactgcagctgaatcttttctctcctgtgtggactacagccatgtgtgaccgtaaatatcctctctgtgtaaaagatttattacaaattgagcagctgaaaggtttctctcctgtgtggactaccATGTGTGACCGTAAACTTCCTCTCTgagtaaaagatttcttacaaattgagcagctgaatcttttctctcctgtgtggactaccATGTGTTTCCGTAAGcttcctctctctgtaaaagatttcttacaaattgagcagctgaaaggtttttctcctgtgtgagttctcatgtgtgtcTTCAGGGTGCTACGTTCAGCGAAAGCTTtatcacactcagagcagctgaaaggtttctcccctgtgtgagttctcatgtgtctcTCCAGATCTGTCTTGAAGCCAAATATTTTCACACAATCACAGCAGCTAAACTGTTTTCCTCCTGTGTGAGtcatcatgtgtctcttcagctCTGCCTTTTGGCTAAATattttcccacactcagagcagttaaaatgtgtttctcctgtgtgagtcatcatgtgtctcttcagacCATACTTGAAgccaaatcttttcccacactccGAGCAGCTGAATCGTTTCTTATGTcctgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188314 False 1497 lncRNA 0.46 2 38176817 38200294
TU188315 True 2119 lncRNA 0.41 2 38169161 38177927

Neighbor

gene id symbol gene type direction distance location
LOC120570991 NA coding upstream 552674 37613121 ~ 37616487 (+)
LOC120570990 NA coding upstream 617263 37527705 ~ 37551898 (+)
LOC120571065 NA coding upstream 660465 37507022 ~ 37508696 (+)
LOC120570988 NA coding upstream 676618 37478550 ~ 37492543 (+)
LOC120570987 NA coding upstream 692570 37458588 ~ 37476591 (+)
LOC120571056 NA coding downstream 138143 38338437 ~ 38340755 (+)
LOC120571002 NA coding downstream 238378 38438672 ~ 38440490 (+)
LOC120571053 NA coding downstream 262715 38463009 ~ 38465285 (+)
LOC120571058 NA coding downstream 373527 38573821 ~ 38593537 (+)
LOC120571044 NA coding downstream 412303 38612597 ~ 38614881 (+)
G139683 NA non-coding upstream 33544 38134155 ~ 38135617 (+)
G139602 NA non-coding upstream 54169 38105858 ~ 38114992 (+)
G139662 NA non-coding upstream 56190 38055583 ~ 38112971 (+)
G139666 NA non-coding upstream 96836 38062295 ~ 38072325 (+)
G139656 NA non-coding upstream 146275 38021755 ~ 38022886 (+)
G139591 LOC104948352,LOC104963332,LOC104953734,LOC104942256 non-coding downstream 68585 38268879 ~ 38272512 (+)
LOC120571083 NA non-coding downstream 192451 38392745 ~ 38395468 (+)
LOC120571098 NA non-coding downstream 204010 38404304 ~ 38417926 (+)
LOC120571099 NA non-coding downstream 217673 38417967 ~ 38418407 (+)
LOC120571090 NA non-coding downstream 292646 38492940 ~ 38507013 (+)
LOC120570989 NA other upstream 646029 37497634 ~ 37523132 (+)
G139164 NA other upstream 722577 37443392 ~ 37446584 (+)
LOC120571062 NA other upstream 746734 37400292 ~ 37422427 (+)
G139141 NA other upstream 793454 37117386 ~ 37375707 (+)
G139152 LOC104963332,LOC104942256,LOC104953734,LOC104948352 other upstream 1052690 37067758 ~ 37116471 (+)
G139581 NA other downstream 226456 38426750 ~ 38430454 (+)
G139594 NA other downstream 393281 38593575 ~ 38594662 (+)
LOC120571012 cct3,LOC102778987,LOC105012686 other downstream 736452 38936746 ~ 38957569 (+)
G139838 NA other downstream 772416 38972710 ~ 38999473 (+)
G139845 LOC108246181 other downstream 811944 39012238 ~ 39015904 (+)

Expression


Co-expression Network