LOC120571012 (cct3,LOC102778987,LOC105012686)


Basic Information

Item Value
gene id LOC120571012
gene name cct3,LOC102778987,LOC105012686
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38936746 ~ 38957569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU188586
GTGAGCTTTTACTCTGGCGGGGTGGTGCTGTTAACCCGTGgcgtggtgtgttcaggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAGgcgtggtgtgttcaggtgtactGCTGTTAACCCGTGgcgtggtgtgttcaggtacccGGGGGGGATCATCCAGGACTCCTGTGTGCTGAAGGGTGTGGGGTGTTCAGGTGTACTGCTGTTAACCCGTGgcgtggtgtgttcaggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAggtgtggtgtgttcaggtgtactGCTGTTAACCCGTGgcgtggtgtgttcaggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAggtgtggtgtgttcaggtgtactGCTGTTAACCTGTGgcgtggtgtgttcaggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAGGTGTGATGGTGAACAAAGACGTGACTCACCCCAGGATGAAGCGCATGATCAAAAACCCCCGAATCATCCTGCTGGACTGTTCTCTGGAGTACAAGAAGGGGGAGAGCCAGACTGATATAGAGATCAGTAAGGAGGAGGACTTTGCCAGGATCCTGCAGATGGAGGAAGAATACGTCCAGCAGATCTGTGAGGACATCATCCGCCTGAAACCAGACCTGGTGTTCACCGAGAAGGGGATCTCAGaTCTGGCGCAGCATTACCTGGTGAAAGCCAACATCACCGCCATCCGCCGCGTCAGGAAGAGTGACAACAACCGCATCTCCAGGTAGACAGCCAATCAGGGTCTCCC
>XM_039819696.1
atgaaaatcaacaGgtacccGGGGGGGATCATCCAGGACTCCTGTGTGCTGAAGGGTGTGGGGTGTTCAGGTGTACTGCTGTTAACCCGTGgcgtggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAggtgtggtgtgttcaggtgtactGCTGTTAACCCGTGgcgtggtgtgttcaggtgttcaggtacccGGGGGGATCATCGAGGACTCCTGCGTGCTGAAAGGTGTGATGGTGAACAAAGACGTGACTCACCCCAGGATGAAGCGCATGATCAAAAACCCCCGAATCATCCTGCTGGACTGTTCTCTGGAGTACAAGAAGGGGGAGAGCCAGACTGATATAGAGATCAGTAAGGAGGAGGACTTTGCCAGGATCCTGCAGATGGAGGAAGAATACGTCCAGCAGATCTGTGAGGACATCATCCGCCTGAAACCAGACCTGGTGTTCACCGAGAAGGGGATCTCAGaTCTGGCGCAGCATTACCTGGTGAAAGCCAACATCACCGCCATCCGCCGCGTCAGGAAGAGTGACAACAACCGCATCTCCAGGTACAAGGAGATCCGCAAGAGGCGGGACAGAGATAAGGGATCGCAAGGAGATAaggagatgaagaaagagaTAAGGACCGGGGGGAAGGAGATCCTGGAGGGGCCAGGAGATCCTGGCGGGCAAGGAGATCCTGGCTGTGGGGCGCAAGGAGATCCTGGGGCAGGGGGGGGTCCTTGGGGCCAGCAAGGAGATCCTGGCTGTAAGTACCTGGGGGGGGCCAGCAAGGAGATCCTGGCTGAAGTGGAGAGGAATCTGCAGGACGCCATGCAGGTGTGCCGTAACGTGCTGCTGGACCCCTTCCTGTTGCCGGGGGGCGGGGCCATAGAGATGGCGGTCTCTAAGCGCCTGATGGAGCGGTCCCGCGCCCTGACCGGCATCGAACAGTGGCCGTACCGCGCCGTGGCAACCGCCCTCGAGGTGGTCCCGCGCACCCTCATCCAGAACTGTGGAGCCTCCACCATCAGGGTGCTGACATCACTCAGGGCCAAACACACCCAGGAGAACAGTGTGAACTGGGGGGTGGATGGAGAGACCGGCTGTCTGGCTGATATGATGGAGCTCGGCATCTGGGAGCCTCTCGCAGTCAAAGCTCAGACCTACAAGACAGCCAtggagacgGCCATCTTGTTGCTGCGTATCGATGACATCGTCTCTGGTCACAAGAAGAAAGACAAAGACGAGCAGATGGGAGGACAGGGAGCCGAGTAGACCCCCCAGGGTCCAGGTCTACGTCAGAGTcactccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggaccaGACGACTCGCTGCAACTTATAGCAAACGGTCAATAAAGTCAAAGTTAGAAACTA

Function

symbol description
cct3 Predicted to enable unfolded protein binding activity. Acts upstream of or within embryonic eye morphogenesis and negative regulation of retinal cell programmed cell death. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT3 (chaperonin containing TCP1 subunit 3).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0046671 negative regulation of retinal cell programmed cell death biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09495 CCT3, TRIC5; T-complex protein 1 subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
TU188586 False 809 TUCP 0.57 5 38938254 38942817
XM_039819696.1 True 1431 mRNA 0.58 10 38936746 38957569

Neighbor

gene id symbol gene type direction distance location
LOC120571006 NA coding upstream 230416 38697721 ~ 38706330 (+)
LOC120571005 LOC104963332,LOC104953734 coding upstream 239191 38690978 ~ 38697555 (+)
LOC120571004 NA coding upstream 268802 38644958 ~ 38667944 (+)
LOC120571068 NA coding upstream 304733 38630789 ~ 38632013 (+)
LOC120571044 NA coding upstream 321865 38612597 ~ 38614881 (+)
LOC120571016 NA coding downstream 95630 39053199 ~ 39121788 (+)
LOC120571448 NA coding downstream 119147 39076716 ~ 39082222 (+)
LOC120571450 NA coding downstream 234016 39191585 ~ 39192174 (+)
G139825 NA non-coding upstream 9815 38926703 ~ 38926931 (+)
G139596 LOC104963332,LOC104948352,LOC104953734,LOC104942256 non-coding upstream 18193 38808850 ~ 38918553 (+)
G139803 NA non-coding upstream 32473 38774315 ~ 38904273 (+)
G139611 LOC104948352 non-coding upstream 78505 38856226 ~ 38858241 (+)
G139793 LOC104963332,LOC104942256,LOC104953734,LOC104948352 non-coding upstream 192980 38740572 ~ 38743766 (+)
G139834 NA non-coding downstream 4094 38961663 ~ 39035152 (+)
G139835 NA non-coding downstream 20920 38978489 ~ 39077439 (+)
G139839 NA non-coding downstream 21472 38979041 ~ 38986014 (+)
G139843 NA non-coding downstream 37501 38995070 ~ 39008612 (+)
G139854 NA non-coding downstream 86298 39043867 ~ 39064485 (+)
G139594 NA other upstream 342084 38593575 ~ 38594662 (+)
G139581 NA other upstream 506292 38426750 ~ 38430454 (+)
G139586 LOC104948352 other upstream 679780 37686538 ~ 38256966 (+)
LOC120570989 NA other upstream 1413614 37497634 ~ 37523132 (+)
G139164 NA other upstream 1490162 37443392 ~ 37446584 (+)
G139838 NA other downstream 15141 38972710 ~ 38999473 (+)
G139845 LOC108246181 other downstream 54669 39012238 ~ 39015904 (+)
G139856 LOC108250349,LOC108249964 other downstream 97202 39054771 ~ 39208169 (+)
LOC120571018 NA other downstream 223266 39180835 ~ 39184528 (+)
LOC120571019 NA other downstream 250390 39207959 ~ 39213480 (+)

Expression


Co-expression Network