LOC120570960 (LOC106675582)


Basic Information

Item Value
gene id LOC120570960
gene name LOC106675582
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35341072 ~ 35341767 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039819646.1
AGTACAACAGCGTATCACATCCTGTTATCGCATCAGAGCTCAGACTAGTTTCATTTCTCAGGAAGTGAGACACAATACAGTCAGACAGTCGATGTCACTGagcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgttccatctgtctagatctactgaaggatccggtgactattaactgtggacacagctactgcatgaactgtattaaagccaGGGATGAAGAGGATCGTAAGTACAGCTACAGCTGCCCTCAGTGCAGGCAGAGcttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccCGGAGAAAACTCAAAGCCATCAAatcctgcctggtgtgtctggtcTCTTACTGTGAGAAACACCTTCAGCCTCATTTTGAATCTCCTGCTTTcgagaaacacaagctggtggagccgtccaagaagctccaggagaacaTCTGCTCTCGTCATGATGAGGTAATGAAGCTTTTCTGCCGTACTGATCAGCAGTGTATCTGTTCTCTCTTCGTGGAtgaacataaaggccacgacacaGTCTCAGCTGCCGTAGAGAAggactga

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039819646.1 True 692 mRNA 0.49 3 35341072 35341767

Neighbor

gene id symbol gene type direction distance location
LOC120571423 fam63a coding upstream 4651 35332912 ~ 35336421 (+)
LOC120571418 NA coding upstream 14057 35317578 ~ 35327015 (+)
LOC120571393 NA coding upstream 126760 35197333 ~ 35214312 (+)
si:ch211-133n4.6 NA coding upstream 163713 35161800 ~ 35177359 (+)
rfx5 rfx5 coding upstream 310535 35020790 ~ 35030537 (+)
LOC120571395 NA coding downstream 106007 35447774 ~ 35467170 (+)
LOC120571399 NA coding downstream 115780 35457547 ~ 35459609 (+)
LOC120571424 LOC106633724 coding downstream 173354 35515121 ~ 35515782 (+)
LOC120570967 LOC106675582 coding downstream 612088 35953855 ~ 35955159 (+)
LOC120571435 NA coding downstream 614650 35956417 ~ 35958468 (+)
G138769 NA non-coding upstream 18818 35321925 ~ 35322254 (+)
G138764 NA non-coding upstream 55489 35284677 ~ 35285583 (+)
G138652 NA non-coding upstream 192531 35147627 ~ 35148541 (+)
G138646 NA non-coding upstream 211919 35128905 ~ 35129153 (+)
G138599 NA non-coding upstream 309283 35031014 ~ 35031789 (+)
G138772 NA non-coding downstream 5265 35347032 ~ 35356478 (+)
G138776 NA non-coding downstream 49673 35391440 ~ 35816515 (+)
G138666 NA non-coding downstream 50319 35392086 ~ 35541529 (+)
G138728 NA non-coding downstream 118657 35460424 ~ 35467841 (+)
G138715 NA non-coding downstream 141643 35483410 ~ 35527783 (+)
mllt11 NA other upstream 24208 35299287 ~ 35316864 (+)
LOC120570959 NA other upstream 50817 35240295 ~ 35290255 (+)
LOC120571788 LOC103147980,LOC106964283,LOC107396830,LOC103369207 other upstream 767695 34540077 ~ 34573377 (+)
LOC120571618 NA other upstream 1162526 34163590 ~ 34178546 (+)
LOC120572044 NA other upstream 1394109 33890732 ~ 33946963 (+)
LOC120570961 NA other downstream 30200 35371967 ~ 35377206 (+)
mindy1 fam63a other downstream 37072 35378839 ~ 35444328 (+)
LOC120571398 NA other downstream 61669 35403436 ~ 35517319 (+)
G138692 LOC106676976,LOC106675582 other downstream 97524 35439291 ~ 35497618 (+)
LOC120571400 LOC106675582,LOC106676976,LOC106675585,LOC101480093 other downstream 97580 35439347 ~ 35516617 (+)

Expression


Co-expression Network