tdp2b (tdp2,LOC102195294)


Basic Information

Item Value
gene id tdp2b
gene name tdp2,LOC102195294
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 18186218 ~ 18189788 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820416.1
TATTCATTAGTAACTGTACAGGTAACCTAGAGTTGTTAACTTTCAATCATACAAagtacagtttgctgctctgcgaTTTGTTGTAACCTAATTAGCAAATTCCCCCGGACGCCTTTCACTGGTACACCTGAGAGAATTTGCAGAGAAAAATATTGACTAATGTTTGCATTTAACTCTATTCCCGTGTAACTCTATAAGTAAAACTAGTAGCTAGAAAAGATGGCTTCTACATCCGACTTTGACAAACCGTCAGTTTCTAATGTAGAAGAAAACAGAAGTCGCCTCTGCGATGAGTTTGCGGCAGTAACAGGAACTGATAGCGCTGTGGCCCAGTGCTACCTGGCTGAAAATGAGTGGGAGATGGAGAGAGCTTTGAACTCATTCTTTGAAGCTGATTTGGAGAAAGTATTTGAAGAAGATTTCCCAGAGAGTGAAAccagccccccaaaaaagaagcaaaaagtTGAGAAAAAAACACCAGGAGACTGTATAGATTTGACTGCAGACAGTCCAGCCTCCACACGCAAACCCTCAGAAGAAGACGACAATAAACTGTCACTGATTTCCTGGAACGTGGATGGACTTGATACAGACAACCTTGGAGAGCGAGCCAGAGGCCTGTGCTCCTTCTTAGTCTTATACACTCCTGACGTGGTGTTTCTACAGGAGCTCATTCCACCTTACGTCCAGTACCTGAAGAAACGGGCTGTCAGCTACCTACTCATTGAAGGTGGTGAAGATGGTTACTTCACTGGGATGATGCTGAAGAAGTCACGGGTCAAATTCGTGGAGAGCGAGATAGTCACTTACCCCACTACTCAAATGATGAGGAATCTGCTTGTAGCTCAGGTGACTTTCAAAGGCCAGAAGCTGTGTTTGATGACATCCCACCTCGAGAGCTGTAAAGGCCAAGCAGCGGAGCGGATGAAACAGCTGCGAGTGGTGATGCAGAGGATGAGAGACGCACCTGACGATGTCACTGTCCTGTTTGGAGGGGACACAAACCTGAGGGACACTGAGGTTACCAAAGTGGGTCTGCCCTTCAGTGTCTGCGATGTGTGGGAGCGACTGGGAAAGCAGGAGCACTGCCGCTACACATGGGACACCAaagccaacaacaacaagactGTTCCTTATGTCAGTCGCTGCCGTTTTGACCGGGTCTACCTCCGCCCGGCTACCAAGGACGGCGTCCAACGCCTGGCCCCCGACCACATGGCCTTGGTGGGGCTGGAGAAGCTGGACTGTGGACGCTTTACTAGTGATCACTGGGGAATCTACTGTAGCTTCTCTGCTGCGTAGAAATGCACAAAACAACCTGAGACGTGCCAATTTAAGTTTTGGATCAGCTGGTctagtttgttttgtgtgttttacagtCCCACTGCACACCATGTGAGTGCTGGGTTCAGAACGCAGAAACATGTTCTCTGTGAAAGGAGATGTTCTGATCTCAGCTGACGTTGGTTACCTGTAAATTTGATGTATTGATTTGATTAGTTTTATCTTCTAATGTGTCTCTGCCCaagagtttgtttttttgttcgaAAGCaccaataaatgtaaaaatgtcagtTTGCAGCACTGTGCCGCTGTAGTATTGATAGCTGACCACTAGAGAGCACCAAAGAGTTGAATTGcaattgttaaaaaaagtcatattttctGATGGCAGTCAGCATTtacaacaaaagaaataaaatcagTCTGAGTGATTGGTGACTCCAAATTCAACTTCATGTTAACTACTAAATCATTGTAATTTAAGCTAATATAGGTCCATAATGTTTGCCTGCTATGTTATGTAAAATGTCTCCTGTGAAAAAAGCCTATTAGAATGATACTGTATATAACGATTTAATTGCACCTATAATATACAATTCTGCATTATGACCTCAGTTCTACCCTAAACCAGATGTAACCTTCTCACAGTCTCTGCCAACACACTGTCAAGACgtgtccctctcctctctcggTAATGCACCCTTCAGATTTGAGAGTGTGTTTTCATGTATGCTCGGTGAACAGACAGCACAGTTTTTTACAGCCCAGTCACACAGACCCGAAGAAGAGCTGACCTTATGAGAGGACACAGATGTGACTCTTCCCTGGGAGCAGGCGTCATCAGAACAGGCCTCCCTCCCCCGTTTGTCCCCGCTCACTGGTTCCTGATTAGCAAGGACACTTGAGCTAAGTCTGTTTAGCTTTAATGAGTTCACCTaaagcaaaaaaacataaactttAAGAATgaa

Function

symbol description
tdp2 Enables metal ion binding activity; phosphoric diester hydrolase activity; and single-stranded DNA binding activity. Involved in double-strand break repair and neuron development. Located in PML body; aggresome; and cytoplasm. Implicated in autosomal recessive spinocerebellar ataxia 23.

NR:

description
tyrosyl-DNA phosphodiesterase 2

GO: NA

KEGG:

id description
K19619 TDP2; tyrosyl-DNA phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820416.1 True 2252 mRNA 0.45 7 18186218 18189788

Neighbor

gene id symbol gene type direction distance location
necab1 necab1 coding downstream 24546 18116387 ~ 18161672 (-)
si:ch211-57n23.1 LOC104947050,LOC103376119 coding downstream 90543 18092592 ~ 18095675 (-)
gatad1 gatad1 coding downstream 95300 18088391 ~ 18090918 (-)
LOC120571527 NA coding downstream 99175 18079544 ~ 18087043 (-)
lrrc14b lrrc14 coding downstream 106321 18076901 ~ 18079897 (-)
c13h6orf62 clg22h6orf62,LOC108240366,LOC102228185,LOC101464686,LOC104924567,LOC107087843,LOC103135136,LOC106515831,LOC104947055 coding upstream 1305 18191093 ~ 18194027 (-)
ripor2 fam65b coding upstream 11088 18200876 ~ 18261263 (-)
si:dkeyp-120h9.1 LOC103376020,LOC104947060,LOC101167380 coding upstream 87991 18277779 ~ 18291741 (-)
hey1 hey1,LOC103376003 coding upstream 119291 18309079 ~ 18312003 (-)
zbtb10 zbtb10 coding upstream 177230 18367018 ~ 18383413 (-)
LOC120571945 NA non-coding downstream 30095 18152470 ~ 18156123 (-)
G134535 NA non-coding downstream 71786 18114205 ~ 18114432 (-)
G134528 NA non-coding downstream 109787 18075047 ~ 18076431 (-)
G134499 NA non-coding downstream 119616 18066316 ~ 18066602 (-)
G134495 NA non-coding downstream 132506 18053245 ~ 18053712 (-)
G134544 NA non-coding upstream 4297 18194085 ~ 18195073 (-)
G134546 NA non-coding upstream 8100 18197888 ~ 18200060 (-)
G134622 NA non-coding upstream 101995 18291783 ~ 18294923 (-)
G134623 NA non-coding upstream 107599 18297387 ~ 18303527 (-)
G134632 NA non-coding upstream 142834 18332622 ~ 18332932 (-)
rbm24a rbm24 other downstream 169190 18006128 ~ 18017028 (-)
si:ch211-199g17.9 LOC104947036 other downstream 241744 17938792 ~ 17944474 (-)
LOC120572101 NA other downstream 244118 17941968 ~ 17942100 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 292789 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 343984 17837572 ~ 17842234 (-)
G134893 LOC104963956 other upstream 1274557 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1334390 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1503267 19693055 ~ 20076540 (-)
G134942 NA other upstream 2048596 20238384 ~ 20239260 (-)
LOC120571828 NA other upstream 2758310 20948098 ~ 20953106 (-)

Expression


Co-expression Network