necab1 (necab1)


Basic Information

Item Value
gene id necab1
gene name necab1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 18116387 ~ 18161672 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821105.1
CCGTCGCTCTTTTTGACCATTGGCTTTGATCAGATAAGAGGTTAATGTAGACACATTCTTTTGCACAGTAGGTATAACTGAAGCTACATTTTGAATGATGGATTGTTCAGAGGAGGTTCAGTCTGTGTCTGAGGAGCCCACAGCTCAAATGGAACTAAAAAGGGGAATGTCGATTTTCATTGATATTTTACGGAGAGCTGATAAAAACGATGATGGAAAGCTGTCCTTTGATGAATTCAAAGCCTACTTCTCTGATGGTGTCTTGACAGCTGACGAGTTGAAGGAGCTCTTCCACACAATTGACACTCATAACACAGACAATGTGGACACTGATGAACTCTGTGAGTATTTCTCCCAGCACCTCGGTGAATATGAGAATGTTCTCGCTGCCTTAGAAGACCTGAATAAGTCCATACTGAAGGCGATGGACAAAACAAAGAAGGAATATCAGGAGTCCACCCACCTGGAGCAGTTTGTGACCCGATTCTTGCTGAAAGAAACGACTAATCAGCTTTATTCACTTCAAAGCTCTCTCGAGTGCGCCATGGAAACCACAGCCGAGCAGACTCGCAAGGAGAAACAGGGCCCGCTGAAGCCAGAGGTTCTGTCCATCCAGTGGTCAGGTCGTCGCTCCAATCGGAGGCTTCAGAGAAACTGCAGCCTCTCTCCCAACAACCCTCTCCTCAGTCTTGTCAATGCAGGTGTTTATGAGGAAGACAGCCAGTGGATGATCCAGGTAAACAGACTGCAGAGGCTTATCGACCGTCTAGAAAAAAAGGAGATTCGTCTGGAGCCCGTTGAAGAGGAGGTCTTGGAGAGCAAATCGCACATCCTGATAGTCCAGAGGCAGCTGCCGGTGCTGGAGGACGAGCTGGAGGAGTTTCGTTTGGCTCTCAGACAGTACATGGAGTGTGCCTGCGCCCAGACTGGATGTCTACACATCGCAGTTCAGCGGCTGGCGAATGAATCACGCTTCATTCTCTATGAATTCTGGGAGCACAACAACGTGTGGAAGAATCACCTGCAGACCAACTACAGTAAGACCTTCCAGAGGGGGAACGTGGACTTCCTGGAAACTCCTGAGAGCATCACCACCATGCTGGTTCCTGCCTCATGGTGGGTCCTCAACAACAACTGAAAGTGTTGACGAGCACCCTTCGCAGATTGCCAATTATGGGTGCAGAGAGCAATCTGTCAATACATCAGAAgtccacagcacacacacacactcttgaaGTCATGGTGATTAGTATTTATGACCTCCATGTTCCTTCATAGTTATAGGTGGTAGTCTGAAATAGTCCACGTGTTTGTTTATACTCCTAGACGACGCTCTGACGTCTTAAAAGCAATTACCTCATCAAACAGAGACCCATCTGATGATCTGACATCATCACTGTTTGACGTGACATCATCTGCAACCCGGGGTAGATCAtgagaactgtgtgtgtgtgtgtgtgtgtgtttgtgtgcgtgcgtgcgtgcatgcatgcatgcatgtgcatatGTGCGCGTttgtgtgagggagagagagagggaaggacaGACATAATTGTATCAATTGTAGCAGCTCTGGGGAGCTAATTAAACCAttattctgttgttgttgttgtattcaATGTGTGAAATAAGATACAAATCTGTTCATCACAAATAAAGATGCTATATTGTTGTGTAA

Function

symbol description
necab1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in nervous system. Orthologous to human NECAB1 (N-terminal EF-hand calcium binding protein 1).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23854 NECAB; N-terminal EF-hand calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821105.1 True 1678 mRNA 0.47 13 18116387 18161672

Neighbor

gene id symbol gene type direction distance location
si:ch211-57n23.1 LOC104947050,LOC103376119 coding downstream 20712 18092592 ~ 18095675 (-)
gatad1 gatad1 coding downstream 25469 18088391 ~ 18090918 (-)
LOC120571527 NA coding downstream 29344 18079544 ~ 18087043 (-)
lrrc14b lrrc14 coding downstream 36490 18076901 ~ 18079897 (-)
LOC120571825 NA coding downstream 45242 18069585 ~ 18071145 (-)
tdp2b tdp2,LOC102195294 coding upstream 24546 18186218 ~ 18189788 (-)
c13h6orf62 clg22h6orf62,LOC108240366,LOC102228185,LOC101464686,LOC104924567,LOC107087843,LOC103135136,LOC106515831,LOC104947055 coding upstream 29421 18191093 ~ 18194027 (-)
ripor2 fam65b coding upstream 39204 18200876 ~ 18261263 (-)
si:dkeyp-120h9.1 LOC103376020,LOC104947060,LOC101167380 coding upstream 116107 18277779 ~ 18291741 (-)
hey1 hey1,LOC103376003 coding upstream 147407 18309079 ~ 18312003 (-)
G134535 NA non-coding downstream 1955 18114205 ~ 18114432 (-)
G134528 NA non-coding downstream 39956 18075047 ~ 18076431 (-)
G134499 NA non-coding downstream 49785 18066316 ~ 18066602 (-)
G134495 NA non-coding downstream 62675 18053245 ~ 18053712 (-)
G134338 NA non-coding downstream 325772 17790395 ~ 17790615 (-)
G134544 NA non-coding upstream 32413 18194085 ~ 18195073 (-)
G134546 NA non-coding upstream 36216 18197888 ~ 18200060 (-)
G134622 NA non-coding upstream 130111 18291783 ~ 18294923 (-)
G134623 NA non-coding upstream 135715 18297387 ~ 18303527 (-)
G134632 NA non-coding upstream 170950 18332622 ~ 18332932 (-)
rbm24a rbm24 other downstream 99359 18006128 ~ 18017028 (-)
si:ch211-199g17.9 LOC104947036 other downstream 171913 17938792 ~ 17944474 (-)
LOC120572101 NA other downstream 174287 17941968 ~ 17942100 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 222958 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 274153 17837572 ~ 17842234 (-)
G134893 LOC104963956 other upstream 1302673 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1362506 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1531383 19693055 ~ 20076540 (-)
G134942 NA other upstream 2076712 20238384 ~ 20239260 (-)
LOC120571828 NA other upstream 2786426 20948098 ~ 20953106 (-)

Expression


Co-expression Network