LOC120571945


Basic Information

Item Value
gene id LOC120571945
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 18152470 ~ 18156123 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641323.1
GCCTCTTTCTTTGTGACTTTAAGGGAAACTCAACATTAAACAAATAATACAGGTGTGTTTTTACAGACTTAGACTACCAgcttgcaaaaataaataaatagggaAATTAAATACTCCACCCTTAAAGATCCCCAACAATAATGTGTGTCTGACATGTTTTTTCCCCGCAAAAAAAGTATAATCCCACATTAAAATCCTTAAAAACTCCCTCTTTCCACTTTTAGCAGATAAATGTGAAAACAGCCTTCTGGTGTCAAAGTCTGCACAAACATCATTCTGCGCTATGAAACTCAAACATCCAGCGTTGGAACaacaaaacacttatttttgaGTGGAGGGTGACTTTAAGGCTGCTAAAAGCCATACACTGAGTAAGAATTTAATTACCTTCATTGGAATAATTAAACAGTGTTTTGCAGCCAGAGCATGAAACACTTCGAGCCACCGCAGCTGAAGGTATATAAAGAGTGCGTTTCCTCTCCCTCAATAACAGCTACCTGTTGCTGCAACTGCAACTTTATCAGATCATCACGACAAAGGTAAGACTGCAGGATTCACTCTTTGATCTCAGCATCAAATAATGATTAttgttctgtatttttttatcattaggTATAACTTTTATTTCCCTTCAAAAAGCGAAATCTTTTTTACAGATTCCACCAGATCAGTATCACACTCACTTTCTTTATTACTGCTGGTCACTGCAGTAGACAGATATAAAGACAATAATTGATGCACTGCAATAGTTATCAAACATATTCTTTTTTGCTCTGTTCATCTCTGATTCATTATAGCCTCATTTGATTACGAGTCACACAATTGTAACTCATGGAAAACATGTTTAAAGGAGCCCTTCTACTTTGTCGAAATgcaaatgtgaagaaaaaaaacttcagaGTCCAGAGTTCTTAGGggcagaggggaggggagggagagaggggagggtgtTGAGCTTCCTGACTGCCTGGGGAATGAAGCTGTTTGCCAGTCAGGTGGAACAGGCTTGGTTGCTCCGGTACCGTCTCCCAGATGGCACGAAGCTGAAGAGGCTGTGTGAGGGGTGGCTGAGGTCACCCACAATGCTGGTTGCTTTGCGGCATGTCTGCCATCTATACCAGGCAAATCTGGTCTCTATCAAAAGTGAAGAAGAGAAGAACTTTTTGAGAGCTTTGGTTGGACTATCTGGACTGGGGGCACTGATGCTGTTGAGGATCATGAATGGCAGTGGACTGATGGCACCATGTTCAACAGCATCATCTGAAAAACGGCAGTCCTCAAGAGGGAAATATAAAGCTAATCAGAGCGTTTCCATGACCACAGTAGTAAACAAACATGGCATCTGTGGAGGAACGTGTACTAGGAcgaataaaggaaaaaaacagacgactttcacttttaaaattgtatttcatAAAATAATTCTATGTCAAGATGCCTTAACCTGTTCCCACAGATATATATTTTGGTGACCTTGACTGTAAGGCAAAACGATCTTATTTCTGCATTAAGTACCTGTAATGGCCACCATATCACATCTTTCATGATGATGACTTCACATCCACTTCCGAGACGTAAGGCCTTGATGATGTCAACGTTGGAGAGTTTGTTGCTAATATTGATCCACTTCCAATTAACTCAGTAAACACAGCATTTATTCTCAATGTAAAGAAgccaatatttcagtctgcagattgtgatttcatttaataaactgGTGGAATTGAAAGTGAACTGAAAGCTGCTTGCATTCAATAAAGACAATAACTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641323.1 True 1773 lncRNA 0.40 3 18152470 18156123

Neighbor

gene id symbol gene type direction distance location
si:ch211-57n23.1 LOC104947050,LOC103376119 coding downstream 56795 18092592 ~ 18095675 (-)
gatad1 gatad1 coding downstream 61552 18088391 ~ 18090918 (-)
LOC120571527 NA coding downstream 65427 18079544 ~ 18087043 (-)
lrrc14b lrrc14 coding downstream 72573 18076901 ~ 18079897 (-)
LOC120571825 NA coding downstream 81325 18069585 ~ 18071145 (-)
tdp2b tdp2,LOC102195294 coding upstream 30095 18186218 ~ 18189788 (-)
c13h6orf62 clg22h6orf62,LOC108240366,LOC102228185,LOC101464686,LOC104924567,LOC107087843,LOC103135136,LOC106515831,LOC104947055 coding upstream 34970 18191093 ~ 18194027 (-)
ripor2 fam65b coding upstream 44753 18200876 ~ 18261263 (-)
si:dkeyp-120h9.1 LOC103376020,LOC104947060,LOC101167380 coding upstream 121656 18277779 ~ 18291741 (-)
hey1 hey1,LOC103376003 coding upstream 152956 18309079 ~ 18312003 (-)
G134535 NA non-coding downstream 38038 18114205 ~ 18114432 (-)
G134528 NA non-coding downstream 76039 18075047 ~ 18076431 (-)
G134499 NA non-coding downstream 85868 18066316 ~ 18066602 (-)
G134495 NA non-coding downstream 98758 18053245 ~ 18053712 (-)
G134338 NA non-coding downstream 361855 17790395 ~ 17790615 (-)
G134544 NA non-coding upstream 37962 18194085 ~ 18195073 (-)
G134546 NA non-coding upstream 41765 18197888 ~ 18200060 (-)
G134622 NA non-coding upstream 135660 18291783 ~ 18294923 (-)
G134623 NA non-coding upstream 141264 18297387 ~ 18303527 (-)
G134632 NA non-coding upstream 176499 18332622 ~ 18332932 (-)
rbm24a rbm24 other downstream 135442 18006128 ~ 18017028 (-)
si:ch211-199g17.9 LOC104947036 other downstream 207996 17938792 ~ 17944474 (-)
LOC120572101 NA other downstream 210370 17941968 ~ 17942100 (-)
snrpd1 snrpd1,LOC107655105,LOC107559756 other downstream 259041 17886458 ~ 17893429 (-)
si:ch211-215i13.3 baalc,LOC103376370,LOC104947028,LOC102079175,LOC102207491,LOC101482105,LOC103394441 other downstream 310236 17837572 ~ 17842234 (-)
G134893 LOC104963956 other upstream 1308222 19464345 ~ 19473111 (-)
tshz1 LOC103358534 other upstream 1368055 19524178 ~ 19690006 (-)
csmd3b LOC102796854,LOC102292540,LOC101468178 other upstream 1536932 19693055 ~ 20076540 (-)
G134942 NA other upstream 2082261 20238384 ~ 20239260 (-)
LOC120571828 NA other upstream 2791975 20948098 ~ 20953106 (-)

Expression


Co-expression Network