XLOC_004816 (thbs2b)


Basic Information

Item Value
gene id XLOC_004816
gene name thbs2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30653047 ~ 30681927 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009512
AGTTATGAGGAGGGAGACCGTGAGTCCGGCATCATCTGGATTTATCACGTACCAGCTTTTGGAACATAAAGACATTGTTCAGCAACACCTCATGATTGACTGCATTTCCCTGTGAACCGCGTAACCCAGCTTAATGCGCGAATTTTAAACTTTGCGCTTGGAGGACCCGTGGCATCTCCAAGTTTTACGCAATGAATTTCTAATCACTGGCGTGGGTTTACCATTGTGGAACTGACTGAGGAGTAAAGCGTTATTTTCATcttgtatatatattttcagttttgcTATAATCCCAGTGTGCACCTTCATTCGGAAGAATGATTCTCCGAAGATGTTTCCGATTGTTGGCCCTTTTGCTTCTGTTCACCTCTGTTAAATCTCAAGatgcacAATTGGAAGATGAGACCATATTTGACTTATTTGAATCCAGTGGGATCACACGCAAGACCATCGGAGTGAAGCTTTTTAAGGGTCTGGACAGCGATGCTCCAGCATATCGCTTCATCCGTTTTGACCAGCTGCCCTCTGTCAGCTCCACAGCGCTACAACAACTTCTTCTGCAAATACAAAACAATGAAGGCTTCATTCTGACAGCCACATTGCGCCAGGACCGTACATCTCGTGGCACCATTCTTGCACTGGAAGGCCCAGGAGAGCGCAGGCAGCTTGAGATTGTTTCAGATGGCAGAACCAACACTCTAGATTTGGTGTATTGGTGGGCCGATGGCTCTCGCAACGTGATTTCGTTTGAGGAAGTAGACCTCTCGGATTCACAATGGAAAAATATAACACTCTATGTGCACGGGGAGACAGCAACTTTGTACATTGGTTGTGGACTCATTGATAGCTTCATTCTTGATGAACCTTTCTATGAACACCTTAGTGCAACTGGCGCCAGTATGTTCGTGGCCAAAGGGTCCACAAGAGAAAGCCATTTTAGGGGCTTGCTGCAGAATGTACGTTTTATCTTTGACACCCAGCTTGAGGACATTCTGGAGAGCAGGGGATGTGATCTTGGAAACCCAGTGGAGGCGAATAAAGTCAGTGAGAGCGCAGAGTTTGTGGAGGTTCCTTCTTCAATCGCCACCAATGTAATTGGACAGAATACAGACGTTCCAGCAACCAGCTCATCAGAACTGATGTGTGAACGCTCTTGTGAAGAACTGGCCAACCTTTTCCAGGAGCTCAAGGGTCTCAGAGTTGTCGTCAGCAACCTCATAGATGGCCTGCAGAAAGTGacAGAAGAAAACACGGCAATGAAGGAGGCGCTAAACAAGATGCAAAGTCTTTCAGAGCAGAGTATGTGTTGGCAAGATGGTCGTATGTTTGAGGACAAGGAGGACTGGATTGTGGATAGCTGTACTAAATGTACCTGCCAAGAAGGAAAAGTTGTTTGTCGACAGATCACTTGTCCTCCAGTGGCATGTGCCAATCCATCCTTCATCGATGGCGAATGCTGTCCAGTTTGTCTTCCAATGGACAGTGAGGACGGCTGGTCTCCTTGGTCAGAATGGACTCAATGCACAGTCACATGTGGAAGTGGGACTCAACAAAGGGGGCGCTCTTGTGACGACACAAGCAACACATGTTCTGGCCCATCGATTCAGACACGCAAGTGCAGTTTGGGAAAGTGTGACCGCAGAGTTCGTCAGGATGGTGGCTGGAGCTTGTGGTCTCCCTGGTCATCCTGCTCAGTAACATGTGGGGAAGGACTGATCACACGTATCCGTCACTGCAATGCTCCTGTTCCACAAAGAGGTGGCAAAGACTGTGAAGGTGAAGGACGAGAGACACAGAGCTGCCACACAGATCCCTGTCCCATTGATGGTGGCTGGGGCCCATGGTCTCCGTGGGCAGCATGTTCAGCTACATGTGGAGGGGGCCTGAAGAGTCGTGTCAGAGAGTGTAACAGCCCTGAACCGCAGCATGGAGGAAGGAAGTGTCTTGGAGACTCCATTGAAAATGAAGTATGCAACCGACTGGAGTGTCCTATTGATGGCTGCCTTTCCAACCCATGCTTCTCTGGAGTCGAGTGTAACACAGCTTCTGATGGATCCTGGGAATGTGGACCCTGCCCAAATGGTTATCGGGGCAATGGAACTTCCTGTGAAGATGTCAACGAGTGTAATATGGTGTCAGATCTATGTCATAAAGTGGGTGGCCTACAGCAGTGTGTGAACACAGACCCCGGATTCCACTGTCTCCCCTGCCCCCCTCGCTACAAAGGGACTCAGCCCTACGGCATGGGAGTGGAGTCAGCTAAAACCAACAAACAGGTTTGTGAACCCTACAACCCCTGCAAAGACAACAGCCACAGCTGTCACAAGTTTGCTGAATGCATCTTCCTCAGTCACTTCACTGACCCCATGTACAAGTGTGAGTGCCGGATTGGTTATGCTGGAGACGGCATCATCTGTGGTGAGGATTTTGATCTGGATGGATGGCCCAACCAGGATCTTGTGTGTGGAGCAAATGCCACCTATCATTGCAAAAAGGACAACTGCCCGACTTTACCCAACTCAGGCCAGGAGGACTTTGACAATGATGGACAAGGAGATGCTTGTGATAAAGACGATGATAACGATGAAATTGTGGATGAAAGGGACAACTGTCCCTTGATGTACAACCCCAGACAATATGACTATGATAAGGATGATGTTGGAGACCGCTGTGATAACTGCCCGTATGAACACAACCCCGctcagacagacacagacaacaATGGAGAAGGAGACGCCTGCTCTGTTGATATGGATGGAGAtgAAATTCTGAATGAGCGAGACAACTGCCCTCTCATTTATAACACTGACCAGAAAGACACAGATTTAGATGGCGTTGGAGACCAGTGTGACAACTGCCCATTAGTCCACAACCCACAACAGACGGATTCAGATAACGATCTAGTAGGAGACCAGTGTGATAACAATCAGGACATAGATGAAgatggacatcaaaataacatggATAACTGCCCATACATACCCAACGCTAACCAAGCTGACCACGACGGAGATGGGAAAGGAGATGCTTGTGATTTTGATGATGATAATGACGGCATTCCTGATGACCGAGATAACTGCAGACTAGTTCCAAACAAAGACCAAGAGGACTCTGATGGTGATGGTCGAGGTGAGGCCTGCGAGAATGATTTCGACAATGACAATGTGCCAGATATCTTTGACGCCTGTCCAGAAAACAGCGGCATCAGTGTCACAGACTTCCGGAAGTTTCAGATGGTTCACCTCGACCCCAAAGGAACCACGCAGATCGATCCCAACTGGGTGGTCCGAAACCAGGGCAAAGAGCTTGTGCAGACGGCCAACTCCGACCCTGGCATTGCAGTGGgatttgatgagttcagTGCCGTGGATTTCAGCGGGACCTTCTACGTGAACACAGACAGGGATGATGACTATGCTGGTTTTGTGTTTGGATACCAGTCTAGCCGGCGTTTTTATGTAGTCATGTGGAAACAGATCACACAGACGTACTGGGAAGAAAAGCCGTCGAAGGCGTTTGGCATTTCTGGCGTTTCTCTGAAGGTGGTCAACTCCACCACAGGCACGGGGGAAATTCTACGCAATGCTTTATGGCACACAGGCAACACTAAGCATCAGGTGCGCACTCTATGGCATGACCCGAAGAATATTGGCTGGAAAGACTTCACTGCGTACCGCTGGCATCTTATCCACAGACCCAAGACTGGCTTCATAAGAGTTGTTGTGTATGAAGGCAAGCAGATCATGGCAGACTCAGGTCCTGTTTATGACAAGACGTTTGCAGGTGGACGACTCGGGTTATTTGTTTTCTCCCAGGAGGCCGTTTTCTTCTCTGACCTCAAATATGAATGCAGAGATAACTGAGTGTAAATGGGGAACAAAGTCTCCTGTCAAAGACTTTTTTGATCAAAGCAGAACTGAATCAATGTAGAGCCTCAGAAAAAGAAGATAAAAAGACTTTCTACAATACGGGGAAATTCGAATCGACAGAAAAGAAGTGAATTTACCTTCAGCTGGACATATATAAAGAGAAACAAATGTTTGGTCAGCATTGCTTTAGATTCACAGTTAATATTTGCACAAATAATCTTTGTAATGccacaatagctatgtttccatccaaagatgcaaatttaattttcatacaaaactgaaatattgcatgtaacatttgcgaataaatcaaaattgtcacttcctgataatcTAGTACCAATAATCAGAAAGAAAATTGGAAATTGCTgcattcaacacaggctcattggaagtaTGTGTTCAGGGCTTTATTTTTGAGAACCGGTAAATATGTGCCCGCAGGTACATAAtggctaaaaaaaacaaatgccatGGTGTAGTACCTCTGACTGCTCAGTATGGATGGCTTTTTCAGTGTGACTGGTTGGCTCGGTAGCTCACCGCA
>TCONS_00009513
ATGATTCTCCGAAGATGTTTCCGATTGTTGGCCCTTTTGCTTCTGTTCACCTCTGTTAAATCTCAAGatgcacAATTGGAAGATGAGACCATATTTGACTTATTTGAATCCAGTGGGATCACACGCAAGACCATCGGAGTGAAGCTTTTTAAGGGTCTGGACAGCGATGCTCCAGCATATCGCTTCATCCGTTTTGACCAGCTGCCCTCTGTCAGCTCCACAGCGCTACAACAACTTCTTCTGCAAATACAAAACAATGAAGGCTTCATTCTGACAGCCACATTGCGCCAGGACCGTACATCTCGTGGCACCATTCTTGCACTGGAAGGCCCAGGAGAGCGCAGGCAGCTTGAGATTGTTTCAGATGGCAGAACCAACACTCTAGATTTGGTGTATTGGTGGGCCGATGGCTCTCGCAACGTGATTTCGTTTGAGGAAGTAGACCTCTCGGATTCACAATGGAAAAATATAACACTCTATGTGCACGGGGAGACAGCAACTTTGTACATTGGTTGTGGACTCATTGATAGCTTCATTCTTGATGAACCTTTCTATGAACACCTTAGTGCAACTGGCGCCAGTATGTTCGTGGCCAAAGGGTCCACAAGAGAAAGCCATTTTAGGGGCTTGCTGCAGAATGTACGTTTTATCTTTGACACCCAGCTTGAGGACATTCTGGAGAGCAGGGGATGTGATCTTGGAAACCCAGTGGAGGCGAATAAAGTCAGTGAGAACGTTCCAGCAACCAGCTCATCAGAACTGATGTGTGAACGCTCTTGTGAAGAACTGGCCAACCTTTTCCAGGAGCTCAAGGGTCTCAGAGTTGTCGTCAGCAACCTCATAGATGGCCTGCAGAAAGTGGCGCTAAACAAGATGCAAAGTCTTTCAGAGCAGAGTATGTGTTGGCAAGATGGTCGTATGTTTGAGGACAAGGAGGACTGGATTGTGGATAGCTGTACTAAATGTACCTGCCAAGAAGGAAAAGTTGTTTGTCGACAGATCACTTGTCCTCCAGTGGCATGTGCCAATCCATCCTTCATCGATGGCGAATGCTGTCCAGTTTGTCTTCGTAAGTCAATGGACAGTGAGGACGGCTGGTCTCCTTGGTCAGAATGGACTCAATGCACAGTCACATGTGGAAGTGGGACTCAACAAAGGGGGCGCTCTTGTGACGACACAAGCAACACATGTTCTGGCCCATCGATTCAGACACGCAAGTGCAGTTTGGGAAAGTGTGACCGCAGAGTTCGTCAGGATGGTGGCTGGAGCTTGTGGTCTCCCTGGTCATCCTGCTCAGTAACATGTGGGGAAGGACTGATCACACGTATCCGTCACTGCAATGCTCCTGTTCCACAAAGAGGTGGCAAAGACTGTGAAGGTGAAGGACGAGAGACACAGAGCTGCCACACAGATCCCTGTCCCATTGATGGTGGCTGGGGCCCATGGTCTCCGTGGGCAGCATGTTCAGCTACATGTGGAGGGGGCCTGAAGAGTCGTGTCAGAGAGTGTAACAGCCCTGAACCGCAGCATGGAGGAAGGAAGTGTCTTGGAGACTCCATTGAAAATGAAGTATGCAACCGACTGGAGTGTCCTATTGATGGCTGCCTTTCCAACCCATGCTTCTCTGGAGTCGAGTGTAACACAGCTTCTGATGGATCCTGGGAATGTGGACCCTGCCCAAATGGTTATCGGGGCAATGGAACTTCCTGTGAAGATGTCAACGAGTGTAATATGGTGTCAGATCTATGTCATAAAGTGGGTGGCCTACAGCAGTGTGTGAACACAGACCCCGGATTCCACTGTCTCCCCTGCCCCCCTCGCTACAAAGGGACTCAGCCCTACGGCATGGGAGTGGAGTCAGCTAAAACCAACAAACAGGTTTGTGAACCCTACAACCCCTGCAAAGACAACAGCCACAGCTGTCACAAGTTTGCTGAATGCATCTTCCTCAGTCACTTCACTGACCCCATGTACAAGTGTGAGTGCCGGATTGGTTATGCTGGAGACGGCATCATCTGTGGTGAGGATTTTGATCTGGATGGATGGCCCAACCAGGATCTTGTGTGTGGAGCAAATGCCACCTATCATTGCAAAAAGGACAACTGCCCGACTTTACCCAACTCAGGCCAGGAGGACTTTGACAATGATGGACAAGGAGATGCTTGTGATAAAGACGATGATAACGATGAAATTGTGGATGAAAGGGACAACTGTCCCTTGATGTACAACCCCAGACAATATGACTATGATAAGGATGATGTTGGAGACCGCTGTGATAACTGCCCGTATGAACACAACCCCGctcagacagacacagacaacaATGGAGAAGGAGACGCCTGCTCTGTTGATATGGATGGAGAtgAAATTCTGAATGAGCGAGACAACTGCCCTCTCATTTATAACACTGACCAGAAAGACACAGATTTAGATGGCGTTGGAGACCAGTGTGACAACTGCCCATTAGTCCACAACCCACAACAGACGGATTCAGATAACGATCTAGTAGGAGACCAGTGTGATAACAATCAGGACATAGATGAAgatggacatcaaaataacatggATAACTGCCCATACATACCCAACGCTAACCAAGCTGACCACGACGGAGATGGGAAAGGAGATGCTTGTGATTTTGATGATGATAATGACGGCATTCCTGATGACCGAGATAACTGCAGACTAGTTCCAAACAAAGACCAAGAGGACTCTGATGGTGATGGTCGAGGTGAGGCCTGCGAGAATGATTTCGACAATGACAATGTGCCAGATATCTTTGACGCCTGTCCAGAAAACAGCGGCATCAGTGTCACAGACTTCCGGAAGTTTCAGATGGTTCACCTCGACCCCAAAGGAACCACGCAGATCGATCCCAACTGGGTGGTCCGAAACCAGGGCAAAGAGCTTGTGCAGACGGCCAACTCCGACCCTGGCATTGCAGTGGgatttgatgagttcagTGCCGTGGATTTCAGCGGGACCTTCTACGTGAACACAGACAGGGATGATGACTATGCTGGTTTTGTGTTTGGATACCAGTCTAGCCGGCGTTTTTATGTAGTCATGTGGAAACAGATCACACAGACGTACTGGGAAGAAAAGCCGTCGAAGGCGTTTGGCATTTCTGGCGTTTCTCTGAAGGTGGTCAACTCCACCACAGGCACGGGGGAAATTCTACGCAATGCTTTATGGCACACAGGCAACACTAAGCATCAGGTGCGCACTCTATGGCATGACCCGAAGAATATTGGCTGGAAAGACTTCACTGCGTACCGCTGGCATCTTATCCACAGACCCAAGACTGGCTTCATAAGAGTTGTTGTGTATGAAGGCAAGCAGATCATGGCAGACTCAGGTCCTGTTTATGACAAGACGTTTGCAGGTGGACGACTCGGGTTATTTGTTTTCTCCCAGGAGGCCGTTTTCTTCTCTGACCTCAAATATGAATGCAGAGGTAGACTTCTTTACACAGCAAAAACTTTCAATATCCTGCCGTCTTTCTTTTTCCATTATTGA
>TCONS_00009514
TCTATATCTTAAACTGataaatttataattaaaacCTTATCTTTTACTAAGCTGTGCgattgttaataatatttatttttatattgatggCAGAGATCCGAGAAGATGTTAATAACATTTACATCCATCATTAAACATTCTCCCCGGCCTAGATCGTGTGGCGGGGATTGTGTGTTCTGAAACGTGTGTGGGTCTGTAggtttgcagctggatatatctcacTTATCTTGGTTCATTAATCCAATTTCTATGTTTGCTTCACATTTCTGCTGTCTTTCCCTAGTGGAGGCGAATAAAGTCAGTGAGAGCGCAGAGTTTGTGGAGGTTCCTTCTTCAATCGCCACCAATGTAATTGGACAGAATACAGACGTTCCAGCAACCAGCTCATCAGAACTGATGTGTGAACGCTCTTGTGAAGAACTGGCCAACCTTTTCCAGGAGCTCAAGGGTCTCAGAGTTGTCGTCAGCAACCTCATAGATGGCCTGCAGAAAGTGAAGAAAACACGGCAATGAAGGAGGCGCTAAACAAGATGCAAAGTCTTTCAGAGCAGAGTATGTGTTGGCAAGATGGTCGTATGTTTGAGGACAAGGAGGACTGGATTGTGGATAGCTGTACTAAATGTACCTGCCAAGAAGGAAAAGTTGTTTGTCGACAGATCACTTGTCCTCCAGTGGCATGTGCCAATCCATCCTTCATCGATGGCGAATGCTGTCCAGTTTGTCTTCGTAAGTGCATGcaaatgcttttgttttgtttttttctgaactatGTTTTGGTAACCAAAACTTAAATTATgtattgttataaaaaaatatatataaatataattgatgtaatgataatgataaaaaaaaaaaa

Function

symbol description
thbs2b Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to be involved in negative regulation of angiogenesis. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS2 (thrombospondin 2).

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100623-1 Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to be involved in negative regulation of angiogenesis. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS2 (thrombospondin 2).

Ensembl:

ensembl_id ENSDARG00000073810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009512 False 4419 mRNA 0.47 21 30653047 30681927
TCONS_00009513 False 3519 mRNA 0.49 20 30653942 30681342
TCONS_00009514 True 859 lncRNA 0.39 2 30661601 30662852

Neighbor

gene id symbol gene type direction distance location
XLOC_004815 NA coding upstream 2021 30636385 ~ 30651026 (+)
XLOC_004813 NA coding upstream 20045 30630019 ~ 30633002 (+)
XLOC_004814 NA coding upstream 20671 30631796 ~ 30632376 (+)
XLOC_004812 nrap coding upstream 34607 30586599 ~ 30618440 (+)
XLOC_004811 si:ch211-28p3.4 coding upstream 85336 30563550 ~ 30567711 (+)
XLOC_004817 kcnk1a coding downstream 23842 30705769 ~ 30712111 (+)
XLOC_004818 slc35f3a coding downstream 41251 30723178 ~ 30756585 (+)
XLOC_004819 aldh18a1 coding downstream 106985 30788912 ~ 30810171 (+)
XLOC_004820 CR751608.1 coding downstream 251924 30933851 ~ 30952692 (+)
XLOC_004821 CR456684.1 coding downstream 513899 31195826 ~ 31195950 (+)
XLOC_004810 CU695011.1 non-coding upstream 143648 30509283 ~ 30509399 (+)
XLOC_004807 NA non-coding upstream 177895 30470981 ~ 30475152 (+)
XLOC_004822 CR456684.3 non-coding downstream 526509 31208436 ~ 31208551 (+)
XLOC_004823 NA non-coding downstream 593832 31275759 ~ 31276339 (+)
XLOC_004828 NA non-coding downstream 886261 31568188 ~ 31568526 (+)

Expression


Co-expression Network