G140292 (rubcnl)


Basic Information

Item Value
gene id G140292
gene name rubcnl
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 564301 ~ 564877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189214
tttcagtgtgtttgtgtctcaggGTGATGGCGGAGTTTGAACAGCTTCCTGCTCACCTGACGGAGCAGCCACACCTCTTTTCCATGGAGGACCTGTTGAGGGTGAAGAAGGGTCAGTTTATGGCTCAGGCCAGAGCGCTGCTACACTCTGCTATCGACCATGTTGAAAACTGTGAGTTGTGTCTGGCCAGAGGTTTTATCTGTGAGTtctgcagagaaagagacatcatctTTCCTTTTCAGA

Function

symbol description
rubcnl Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in autophagosome maturation; autophagosome-endosome fusion; and autophagosome-lysosome fusion. Predicted to be active in autophagosome membrane. Orthologous to human RUBCNL (rubicon like autophagy enhancer).

NR:

description
PREDICTED: uncharacterized protein KIAA0226-like homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189214 True 243 lncRNA 0.49 2 564301 564877

Neighbor

gene id symbol gene type direction distance location
LOC120573607 NA coding upstream 19859 543129 ~ 544442 (+)
LOC120573509 NA coding upstream 248850 314019 ~ 315451 (+)
LOC120573670 NA coding upstream 493635 69341 ~ 70666 (+)
LOC120573513 NA coding downstream 183767 748644 ~ 751655 (+)
LOC120573672 LOC105024657,LOC106023958 coding downstream 225981 790858 ~ 793879 (+)
LOC120573671 LOC107990212,LOC107990219,LOC107990208 coding downstream 247666 812543 ~ 815209 (+)
LOC120573524 NA coding downstream 298441 863318 ~ 890296 (+)
grpel1 grpel1,LOC102799061 coding downstream 903487 1468364 ~ 1478441 (+)
G140286 NA non-coding upstream 60569 503461 ~ 503732 (+)
G140271 NA non-coding upstream 142787 420894 ~ 421514 (+)
G140265 NA non-coding upstream 202000 362063 ~ 362301 (+)
G140261 NA non-coding upstream 240593 323306 ~ 323708 (+)
G140235 NA non-coding upstream 393328 170753 ~ 170973 (+)
G140309 NA non-coding downstream 94831 659708 ~ 659918 (+)
G140313 NA non-coding downstream 181713 746590 ~ 746890 (+)
LOC120573673 NA non-coding downstream 231831 796708 ~ 801154 (+)
LOC120572243 NA non-coding downstream 261111 825988 ~ 833455 (+)
G140341 NA non-coding downstream 314223 879100 ~ 879497 (+)
G140263 NA other upstream 228125 335882 ~ 336176 (+)
LOC120572292 NA other downstream 56239 621116 ~ 623035 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other downstream 1112333 1677210 ~ 1725468 (+)
G140582 NA other downstream 1364746 1929623 ~ 2030627 (+)
G140594 NA other downstream 1457715 2022592 ~ 2032225 (+)
G140613 NA other downstream 1490562 2055439 ~ 2059367 (+)

Expression


Co-expression Network