XLOC_004817 (kcnk1a)


Basic Information

Item Value
gene id XLOC_004817
gene name kcnk1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30705769 ~ 30712111 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009515
ATGGAACTTCACGTACAGCATCGCCTCTTATAGACAGCCTCTTCACTATCTGTCCTATAAACGCAAATGGGTGCGCCCGCTGTGATAAATGCGATGAAGAGCTAACCTGCGTAAGGTGAGGCGTGGAGGAACGAGGCGTCATGTGTTTGACGCAAAATACGAATCGTACTACGGCGAAGGACATCTCATGAATATTAAATTAGCAATACTGACGTTCGCCGACAAACGTCCAATGTCGACGGATGAGCTCGTGAATATGAATTAGGAAACGTAGCGTTGCGTTTTTAACTCCTGAATATGGAAACACCCTCGCCATAGTACGATTAGTAACAACGCGCCTCGATATCGTCTCCGTCACATCAGCTCCGCAATACAGGCAGGAGACGAACAGGAAATTATTACTCTAATACAGCTGTAAGAGTGTTTGCTCTcgtttatttttaacaaacaagtgtttttttttctgtaggctACCTGTGTTAATTATCCCACCTATCTTTTTCCAGCAGAGACAATGCTTCAGTGTCTGTCGGGAAGTTCGTGTATGCGTGTCATTGACGGTTACAAGTCTACGTGGTATTTCTTAGTTCTGGTGCTGGCGTATGTTTTATATCTTATCTTCGGGGCTTTGGTGTTTTCCGCGGTGGAGCTGCCGTATGAAGAGCAGCTTCGACAAGAGCTTCGGACAGTGAAACAGCAATTTCTGGAGGACAATGAATGTCTGTCCAATGACAGACTGGAAGAGTTTCTGATCAAAGCGTTAGAAGCGAGTAATTACGGTGTGTCGGTTCTTAATAATGCCTCCAGTAACTGGAACTGGGATTTCACTTCAGCGTTGTTCTTCGCCAGCACTGTGCTTTCCACGACAGGATATGGGCACACTGTCCCTCTATCAGATGGAGGTAAGGCCTTCTGCATCATTTACTCAGTGGTGGGAATACCGTTCACCCTGCTGTTCCTGACGGCGGTGGTCCAGAGGATCATGGAGTTCAGCACTCGCAGGCCCATAGAGTTCCTGCACCGGCGATGGGGCACCTCCAAACCTCTGCTGGCTGCCATGCACGCCACACTACTGGCCATTATAACTGTCTCCTGCTTCTTCCTCATACCTGCCATCATCTTCTCTGTGCTGGAGGAGGAGTGGAACTTCCTGGAGTCCTTCTATTTCTGCTTTATCTCTCTTAGTACCATTGGCTTAGGGGACTATGTGCCAGGAGAGGGTTACCATCAGAGGTTCCGAGAACTTTATAAACTGGGCATTACTTTCTACCTGATATTGGGCTTGATCGCTATGTTGGTGGTTCTGGAAACCTTCTGTGAGCTTCAGCAGCTGAAGAAGCTCAGGAAAATGTTCTACCTGAGGAAACAAAAAACGGAGGACCAGCTAAACATCGTAGATCACGATCACCTCTCTTTTGCCTCTGTGTCCGACCAGGCAGCCTCATTCAGAGAGGATAAGACTGAACTGTTTCCTGATGATATTGTGTCCGGCTCACCTACTGCTACCTCTAATGGATCACTGGAGCGATGA
>TCONS_00009516
AAATGCGATGAAGAGCTAACCTGCGTAAGGTGAGGCGTGGAGGAACGAGGCGTCATGTGTTTGACGCAAAATACGAATCGTACTACGGCGAAGGACATCTCATGAATATTAAATTAGCAATACTGACGTTCGCCGACAAACGTCCAATGTCGACGGATGAGCTCGTGAATATGAATTAGGAAACGTAGCGTTGCGTTTTTAACTCCTGAATATGGAAACACCCTCGCCATAGTACGATTAGTAACAACGCGCCTCGATATCGTCTCCGTCACATCAGCTCCGCAATACAGGCAGGAGACGAACAGGAAATTATTACTCTAATACAGCTCAGAGACAATGCTTCAGTGTCTGTCGGGAAGTTCGTGTATGCGTGTCATTGACGGTTACAAGTCTACGTGGTATTTCTTAGTTCTGGTGCTGGCGTATGTTTTATATCTTATCTTCGGGGCTTTGGTGTTTTCCGCGGTGGAGCTGCCGTATGAAGAGCAGCTTCGACAAGAGCTTCGGACAGTGAAACAGCAATTTCTGGAGGACAATGAATGTCTGTCCAATGACAGACTGGAAGAGTTTCTGATCAAAGCGTTAGAAGCGAGTAATTACGGTGTGTCGGTTCTTAATAATGCCTCCAGTAACTGGAACTGGGATTTCACTTCAGCGTTGTTCTTCGCCAGCACTGTGCTTTCCACGACAGGATATGGGCACACTGTCCCTCTATCAGATGGAGGTAAGGCCTTCTGCATCATTTACTCAGTGGTGGGAATACCGTTCACCCTGCTGTTCCTGACGGCGGTGGTCCAGAGGATCATGGAGTTCAGCACTCGCAGGCCCATAGAGTTCCTGCACCGGCGATGGGGCACCTCCAAACCTCTGCTGGCTGCCATGCACGCCACACTACTGGCCATTATAACTGTCTCCTGCTTCTTCCTCATACCTGCCATCATCTTCTCTGTGCTGGAGGAGGAGTGGAACTTCCTGGAGTCCTTCTATTTCTGCTTTATCTCTCTTAGTACCATTGGCTTAGGGGACTATGTGCCAGGAGAGGGTTACCATCAGAGGTTCCGAGAACTTTATAAACTGGGCATTACTTTCTACCTGATATTGGGCTTGATCGCTATGTTGGTGGTTCTGGAAACCTTCTGTGAGCTTCAGCAGCTGAAGAAGCTCAGGAAAATGTTCTACCTGAGGAAACAAAAAACGGAGGACCAGCTAAACATCGTAGATCACGATCACCTCTCTTTTGCCTCTGTGTCCGACCAGGCAGCCTCATTCAGAGAGGATAAGACTGAACTGTTTCCTGATGATATTGTGTCCGGCTCACCTACTGCTACCTCTAATGGATCACTGGAGCGATGAGTCTTCCCTTATATTCATTaacttttcaaaaacatttccatTAAGAGCATAATGTATTGTTAGTGTACTCTGCTGTCAAGTTAACTAAAATCTACTATAGATATGAATACTTGAAA
>TCONS_00009517
AGGAAATTATTACTCTAATACAGCTGTAAGAGTGTTTGCTCTcgtttatttttaacaaacaagtgtttttttttctgtaggctACCTGTGTTAATTATCCCACCTATCTTTTTCCAGCAGAGACAATGCTTCAGTGTCTGTCGGGAAGTTCGTGTATGCGTGTCATTGACGGTTACAAGTCTACGTGGTATTTCTTAGTTCTGGTGCTGGCGTATGTTTTATATCTTATCTTCGGGGCTTTGGTGTTTTCCGCGGTGGAGCTGCCGTATGAAGAGCAGCTTCGACAAGAGCTTCGGACAGTGAAACAGCAATTTCTGGAGGACAATGAATGTCTGTCCAATGACAGACTGGAAGAGTTTCTGATCAAAGCGTTAGAAGCGAGTAATTACGGTGTGTCGGTTCTTAATAATGCCTCCAGTAACTGGAACTGGGATTTCACTTCAGCGTTGTTCTTCGCCAGCACTGTGCTTTCCACGACAGGATATGGGCACACTGTCCCTCTATCAGATGGAGGTAAGGCCTTCTGCATCATTTACTCAGTGGTGGGAATACCGTTCACCCTGCTGTTCCTGACGGCGGTGGTCCAGAGGATCATGGAGTTCAGCACTCGCAGGCCCATAGAGTTCCTGCACCGGCGATGGGGCACCTCCAAACCTCTGCTGGCTGCCATGCACGCCACACTACTGGCCATTATAACTGTCTCCTGCTTCTTCCTCATACCTGCCATCATCTTCTCTGTGCTGGAGGAGGAGTGGAACTTCCTGGAGTCCTTCTATTTCTGCTTTATCTCTCTTAGTACCATTGGCTTAGGG

Function

symbol description
kcnk1a Enables outward rectifier potassium channel activity. Acts upstream of or within heart process. Predicted to be located in several cellular components, including perikaryon; recycling endosome; and synaptic membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and heart. Orthologous to human KCNK1 (potassium two pore domain channel subfamily K member 1).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003015 heart process biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0015271 outward rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-26 Enables outward rectifier potassium channel activity. Acts upstream of or within heart process. Predicted to be located in several cellular components, including perikaryon; recycling endosome; and synaptic membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and heart. Orthologous to human KCNK1 (potassium two pore domain channel subfamily K member 1).

Ensembl:

ensembl_id ENSDARG00000045067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009515 False 1531 mRNA 0.47 3 30705769 30711995
TCONS_00009516 False 1469 mRNA 0.47 4 30705855 30712111
TCONS_00009517 True 812 mRNA 0.47 2 30706158 30709125

Neighbor

gene id symbol gene type direction distance location
XLOC_004816 thbs2b coding upstream 23842 30653047 ~ 30681927 (+)
XLOC_004815 NA coding upstream 54743 30636385 ~ 30651026 (+)
XLOC_004813 NA coding upstream 72767 30630019 ~ 30633002 (+)
XLOC_004814 NA coding upstream 73393 30631796 ~ 30632376 (+)
XLOC_004812 nrap coding upstream 87329 30586599 ~ 30618440 (+)
XLOC_004818 slc35f3a coding downstream 11067 30723178 ~ 30756585 (+)
XLOC_004819 aldh18a1 coding downstream 76801 30788912 ~ 30810171 (+)
XLOC_004820 CR751608.1 coding downstream 221740 30933851 ~ 30952692 (+)
XLOC_004821 CR456684.1 coding downstream 483715 31195826 ~ 31195950 (+)
XLOC_004822 CR456684.3 coding downstream 496325 31208436 ~ 31208551 (+)
XLOC_004810 CU695011.1 non-coding upstream 196370 30509283 ~ 30509399 (+)
XLOC_004807 NA non-coding upstream 230617 30470981 ~ 30475152 (+)
XLOC_004823 NA non-coding downstream 563648 31275759 ~ 31276339 (+)
XLOC_004828 NA non-coding downstream 856077 31568188 ~ 31568526 (+)

Expression


Co-expression Network