G140413


Basic Information

Item Value
gene id G140413
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1461638 ~ 1462865 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189356
CTTTGGTGGACCTCATCTCATCACTGCAAGCATTTTTAAAGTGCTGCACAAGAGCTCCCAGGGATGTCCAAACAGCACGAAGAGTCCGAAAGCTACTGGCCACCCAGCGTACATCCAAGATTCTGCCAATGCGAAGAAGTTGTGAGCCTACTTCAGCTGCTGCATTTACAAGTTCACGTTCAtttttgtttgacatactatacagaGAGTATAGCTTCTGGATAAAAGTTTTAAAGTGATTGACAGAGTTTACCTCATCAACTGCATCTGACACAGCAAGTTCAAGTCTATGGTTCATGCAGTGCCATACAAAAAGCTTTGGGAATCTCAAAGTCAGTCTGGTTGCTACTCCTGACTTCTTTCCTAGCATGACACTGGCTCCATCAGATACAAATGTTACCCAGTTTTCATGAAGCCACTCTTCTGTAAAGCCAGCATTAGTTAAACAGGTGAGTAACGCCTGTACTATGCCATCTGCGCTCTGATTTTCCAGTTCAACAAGTTCCAGGAATATGAACTCAGGGCTTTCTTCTTGAATTGATGCTTTAATAGAAACTGTCATGACAGCTTTGTGACTTAAAGAAGATGCCTCGTCAATTAGGACAGCTAACTTACTGGATGATGCTATAATGCTACTGATGATTTTGCTCTGCATCTCACTAGCAACATGTTGTATTATTTGTGTTGCGCACGTAACGTGAATGAAGTATTGAGCCCATTTTTACACCATTCAGTTCCTGCAGCTCAATGAGGCTCTCATGGTCAGAAAAGGGTCAGTTCTTTTTGGCCAGATGGTAGGCTGTTCGAAACACAGCTTCAGTTTCCTTCATGTAGGACTCAGTCATAGTCTCCACTGCATTCTCAATGGCAGCTTCTTTCTGTTGCTCTGCCACCTTCACAGCCTGAGTGTGGGCCTTGGACAACGCATGTTTCCTCACCTTATTTCTCAAGACTGACAAACTTGTTGTTCTACTTCCCTGGCCAGACACTTGAATTTCAAAGTTCATCCATTCTCTTGAGAGCGATACACCTTGCTCCTTGTCGATCCCAATGGAGTTCACACTGCTACAGACCAGACATCCTGCGAAGCATAAACAAACAATGTAACTACTCCTGTATCCACAGTTGTGCGTGTGTATggtccttcacacacacacacacacacacacacacacacacacacacacacacacacacacccccacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189356 True 1228 lncRNA 0.44 1 1461638 1462865

Neighbor

gene id symbol gene type direction distance location
sorcs2 sorcs2 coding downstream 31921 1018258 ~ 1429717 (-)
LOC120573525 mrps28 coding downstream 547958 906545 ~ 913680 (-)
LOC120573590 NA coding downstream 854920 600634 ~ 606718 (-)
LOC120573587 NA coding downstream 1323401 135443 ~ 138237 (-)
LOC120573289 NA coding upstream 29409 1492274 ~ 1500316 (-)
slc1a1 slc1a1 coding upstream 87663 1550528 ~ 1574124 (-)
LOC120573508 LOC103361692 coding upstream 197272 1660137 ~ 1664945 (-)
aco1 aco1 coding upstream 286654 1749519 ~ 1774918 (-)
LOC120573473 NA coding upstream 421037 1883902 ~ 1885687 (-)
G140404 NA non-coding downstream 142063 1290908 ~ 1319575 (-)
G140401 NA non-coding downstream 306696 1154243 ~ 1154942 (-)
G140400 NA non-coding downstream 306927 1116986 ~ 1154711 (-)
G140398 NA non-coding downstream 393732 1067457 ~ 1067906 (-)
LOC120573176 NA non-coding downstream 424960 1036072 ~ 1036678 (-)
G140418 grpel1,LOC102799061 non-coding upstream 5367 1468232 ~ 1478813 (-)
G140437 NA non-coding upstream 18873 1481738 ~ 1482705 (-)
G140451 NA non-coding upstream 56956 1519821 ~ 1521839 (-)
G140454 NA non-coding upstream 67370 1530235 ~ 1530950 (-)
G140492 NA non-coding upstream 200156 1663021 ~ 1663252 (-)
G140274 NA other downstream 1009968 443550 ~ 451670 (-)
tada2b tada2b other upstream 19924 1482789 ~ 1488426 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other upstream 160394 1623259 ~ 1649432 (-)
LOC120573528 NA other upstream 464267 1927132 ~ 2032506 (-)
G140615 NA other upstream 588616 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 991201 2454066 ~ 2573483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009040 NA coding CM030126.1 CM030126.1 21294324 ~ 21295469 (-)