tada2b (tada2b)


Basic Information

Item Value
gene id tada2b
gene name tada2b
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1482789 ~ 1488426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189390
GGAGGGGAAGGACGGCGAGTTCGCCGCCATCGAGAACCTGGCGGGCTTCGAGCTGCTGTCGGACCGGGAGAAGGTGCTGTGCAACTCGCTGAACCTGAGCCCGGCGCGCTACCTGACCGTCAAGACCATCATCATCAAAGACCACCTGCAGAAGAGGCAAGGCATCCCGGCCAAGAGCCGGCTGCCCAGCTACCTGGACAAGGTGCTCAAGAAGCGCATTCTCACCTTCCTCACGGAAAGCGGCTGGATATCCCGGGACGCCTCTTAGCCGTCCCGTCTAGGAAGTCAGAAGTCGATGATTGCTGATAGCTGATAGCTGATTTGCCATGCGCTCCGTAGGCAGGACAAAACTactggctgttttttttattttatttttctcaaaagtgATCTTGTGAATATGTACATTGCAAAGGAAGAGCTCCTTTTCcccactggaaaaaaaaattagtaTATTTTCATACCAGGGCTAGGAACAAAAATAAGCCTTTATTTTTACAATCGGAAAGGGACTAGTGGGTTCAAAGTACTTTGTGTCCATTTTGTTACTACAGTACATGACTGAGAACTACAGTGCTAACAAGTTCTACATAGTGGCAGAGATTTTTTCAGGTGCACTGACGATTTAAAATCCAAACATTGACGGGGCAGATTCATGCTGAAAAGAATAGGGGGGGGAATAAGATCGTACCATTACCTGGAACTGATGGGTGGCCGAAATGGtcacttttgttgttgttgttgttgtagatgTTTTTTTGGGATCTCTCAAACTCGCCCTACTTTGGTCCACTTTGTTAGCTGCTTCATCAGGTAAAGCTGGACTTTATAGAAAGAGCTATAGCTGATTTGGATTTTCGATCATTTTAAGGCCttcctgattttttttgttccttCGTACTGCCGAAAAAGAGAAGGGAAAAAGACAAAGCAGCAGGGTTGGGCCATCTTATGTTAGCTTATCACTGACGTATCAGCACTGGCACATATGTCAGCCAATAAGCAACAAGACATATaagtaaagaaatgccaaagaaTATTACAATATAATTTAGAGACAGTGTCGTCGTTACACggtctgtccaccagagggtgCTGCTGTTCAGCTGTAAAACCTCCCGCGTGCTACATGTCTCGGTCACAATTCTTATCATAGGATCCTTATCATAAATATTCATTTGTGTTtatggtataaaaaaaatatctgtatTTAAAGCCGCTGAATTATATCTTCTGACATATTCCTGCTGAATGAGCAACAATCCAGGTGAAAAGACATCTTTTaggtattatttattttgttatttttaacacCCAGCTAATCTGCTCCATCAGGACTGTTGGTCACTTTGATCAGATGTGATCCCCAGTAACCATTACTAACCCATTACTCATCAAAAAGCTGACTGAGAGAAGAACTTTTTGTGGCGTTTGAATATCTACATAtgcattggtttaaaaaaaatcctttatcggtctgGCTCGTATTAATATTTTAATCACCTTATTGTTTGTCACCTTAAATTAGTATGGGGGGAGAAACTCTCCGTTATTTCTTCAGTCTCTGTCGTTTCACGGCAGCAGCTCTGAAATCACAGAGAAGAAAGGCACGTGAAGGGGTCTTACCTAAGCTGAACTATATGCTAGATTCCGATCTTTTTACTGCAACCGTAACTGTTGGGAAATTGgccttGTcatatttcaaatgtttcttattgtcaacaaatgtcAACTTGTGTAGGTATATTTATTTGAAAAGATCTCCATACGTCCACACAGAGCTCTCTCTGGAGCGTGCAGGACGCAGGACGCCGACTGCGATCACGTTATCTCGTTTGTGATCTGGTTACGAACGACCCGAGTCTCGTACCGTTCCTTAAAAATTGTCCGATTTCGGCGTCAGTCCTTACCAACGTAAGTTCCCagatctcctctcctctccaggtTAGACATTTTGGTTGGCGCCGTTTTCTGCGTCCCCCTTGACGCTGTACTGCAGGgatgtcaaactcaacttccctaagggccacactagaaaatgagaatcccatcaagggccagacagaGTATACTGCTTTTGTGTCatgggaaaagtcaaatatctttgactgaattattgcatgtctcatatatgtcgaagaaaatgccaaaaacggttggaaaaagcgtcaaaaaaacgttgtgaaaaaaagtaggtgggccaaaatgtagaTAGCGGCCGGATCATAATTAacaaggggccagatttggcccgcgggccttgagtttgactcGTGTGCTGTACTGGGACAGCGCCGGCCGCGTGATTTAGAAACGTTCTCAACGCGTTCGGCT
>XM_039822937.1
AGCAGCAGGAGCCAGGCAACATGGCCGACCTGGGGAAGAAGTACTGCGTCTACTGCCTTACGGACGTCACGAACCTGCGGCTTCGCTGCACCGACTGCCCCGATATCGAGCTGTGTCCGGAGTGCTTCTCGGCGGGCGCGGAGATCGGTAATCACCGGAGATGGCACGGCTACCAGCAGGTCGACGGCGGTCGGTTCACTCTCTGGGGTCCCGACGCAGAGGGAGGATGGACCAGCAGGGAAGAGCAGTCGCTGCTCGATGCTATCGAGCAATATGGATTTGGAAACTGGGAGGACATGGCCGCTCACGTTGGAGCGTCCCGAACTCCCCAGGAAGTCATGGAACACTACGTCACCATGTACATCCACGGGAACCTGGGCAAGGCCTGCATCCCCGACAACATCCCCAACCGGGTGACGGACCACACCTGCCCGAGCGGGGGCCCCCTGTCGCCGAGCCTCACCACGCCGCTGCCCCCGCTGGACATCAGCCTGgcggagcagcagcagctgggctACATGCCCCTGCGGGACGACTACGAGATCGAATACGACCAGGACGCCGAGAAGCTCATCAGCGGGCTGTCGGTGAACTACGACGACGAGGACGTCGAAATCGAAATGAAGCGCGCCCACGTGGACATGTATGTGCGCAAGCTCCGAGAGCGCCAGCGGCGCAAGAACGTGGCCCGAGACTACAACCTGGTGCCCACGTTCCTGGGCCGAGACAAGAAGgacaaggagaaggagaagccGGGAGCGCTGGGAGTCACAGGCGCTGGCGGTGGCGCGggtggagcagcagcagcagccggcgGCGGCGGCACTGCTGGATCGGGTTCTACGACGGCAGCGGGATCAGGTCCTGTTCCCGCCACGCCCAAAAGAAAGATCACCaaggaggagaaggagcagCGGGTCAGACTGCGGGGGCTCTGCCAGTTCATGGCCACCCGGGAGTTTGAAGACTTGTTTGAGAACATGCACAAAGAGCGCGCGCTCCGGGCCAAGGTGCGTGAGCTGCAGCGCTACCGCCGCAACGGCATCGCGCGCCTGGAGGAGTCCGCCGAATACGAGGCAGCGCGCCACAAGCGGGAGAAACGCAAGGAGAACAAAAGCGTGGTCACCTCCAAACGGGgcagcggaggaggaggaggaggcgggcTCGGCTCAGGGATGGGGCTCGGGGTCGGAGGCGGGggcgggggcggggggggaggaggaggaggcgttGCCGGAGGACTCGGGGCTGGCGGCGGGATCAAAGAGGAGGGGAAGGACGGCGAGTTCGCCGCCATCGAGAACCTGGCGGGCTTCGAGCTGCTGTCGGACCGGGAGAAGGTGCTGTGCAACTCGCTGAACCTGAGCCCGGCGCGCTACCTGACCGTCAAGACCATCATCATCAAAGACCACCTGCAGAAGAGGCAAGGCATCCCGGCCAAGAGCCGGCTGCCCAGCTACCTGGACAAGGTGCTCAAGAAGCGCATTCTCACCTTCCTCACGGAAAGCGGCTGGATATCCCGGGACGCCTCTTAGCCGTCCCGTCTAGGAAGTCAGAAGTCGATGATTGCTGATAGCTGATAGCTGATTTGCCATGCGCTCCGTAGGCAGGACAAAACTactggctgttttttttattttatttttctcaaaagtgATCTTGTGAATATGTACATTGCAAAGGAAGAGCTCCTTTTCcccactggaaaaaaaaattagtaTATTTTCATACCAGGGCTAGGAACAAAAATAAGCCTTTATTTTTACAATCGGAAAGGGACTAGTGGGTTCAAAGTACTTTGTGTCCATTTTGTTACTACAGTACATGACTGAGAACTACAGTGCTAACAAGTTCTACATAGTGGCAGAGATTTTTTCAGGTGCACTGACGATTTAAAATCCAAACATTGACGGGGCAGATTCATGCTGAAAAGAATAGGGGGGGGAATAAGATCGTACCATTACCTGGAACTGATGGGTGGCCGAAATGGtcacttttgttgttgttgttgttgtagatgTTTTTTTGGGATCTCTCAAACTCGCCCTACTTTGGTCCACTTTGTTAGCTGCTTCATCAGGTAAAGCTGGACTTTATAGAAAGAGCTATAGCTGATTTGGATTTTCGATCATTTTAAGGCCttcctgattttttttgttccttCGTACTGCCGAAAAAGAGAAGGGAAAAAGACAAAGCAGCAGGGTTGGGCCATCTTATGTTAGCTTATCACTGACGTATCAGCACTGGCACATATGTCAGCCAATAAGCAACAAGACATATaagtaaagaaatgccaaagaaTATTACAATATAATTTAGAGACAGTGTCGTCGTTACACggtctgtccaccagagggtgCTGCTGTTCAGCTGTAAAACCTCCCGCGTGCTACATGTCTCGGTCACAATTCTTATCATAGGATCCTTATCATAAATATTCATTTGTGTTtatggtataaaaaaaatatctgtatTTAAAGCCGCTGAATTATATCTTCTGACATATTCCTGCTGAATGAGCAACAATCCAGGTGAAAAGACATCTTTTaggtattatttattttgttatttttaacacCCAGCTAATCTGCTCCATCAGGACTGTTGGTCACTTTGATCAGATGTGATCCCCAGTAACCATTACTAACCCATTACTCATCAAAAAGCTGACTGAGAGAAGAACTTTTTGTGGCGTTTGAATATCTACATAtgcattggtttaaaaaaaatcctttatcggtctgGCTCGTATTAATATTTTAATCACCTTATTGTTTGTCACCTTAAATTAGTATGGGGGGAGAAACTCTCCGTTATTTCTTCAGTCTCTGTCGTTTCACGGCAGCAGCTCTGAAATCACAGAGAAGAAAGGCACGTGAAGGGGTCTTACCTAAGCTGAACTATATGCTAGATTCCGATCTTTTTACTGCAACCGTAACTGTTGGGAAATTGgccttctttttttgggggtggaATGCAAGACACGAGTAGCATTCGTTCGGTAGCGGTCATTGCCTTAAAACTACAACTTTGTTTTGATGACCACATTTTTTGTGGTCATCCAAAAAAAGGAATGGCCTCCCCTTCATTGTATATCTTGAGAATTTAAAGCAGAACTCTGGTcatatttcaaatgtttcttattgtcaacaaatgtcAACTTGTGTAGGTATATTTATTTGAAAAGATCTCCATACGTCCACACAGAGCTCTCTCTGGAGCGTGCAGGACGCAGGACGCCGACTGCGATCACGTTATCTCGTTTGTGATCTGGTTACGAACGACCCGAGTCTCGTACCGTTCCTTAAAAATTGTCCGATTTCGGCGTCAGTCCTTACCAACGTAAGTTCCCagatctcctctcctctccaggtTAGACATTTTGGTTGGCGCCGTTTTCTGCGTCCCCCTTGACGCTGTACTGCAGGgatgtcaaactcaacttccctaagggccacactagaaaatgagaatcccatcaagggccagacagaGTATACTGCTTTTGTGTCatgggaaaagtcaaatatctttgactgaattattgcatgtctcatatatgtcgaagaaaatgccaaaaacggttggaaaaagcgtcaaaaaaacgttgtgaaaaaaagtaggtgggccaaaatgtagaTAGCGGCCGGATCATAATTAacaaggggccagatttggcccgcgggccttgagtttgactcGTGTGCTGTACTGGGACAGCGCCGGCCGCGTGATTTAGAAACGTTCTCAACGCGTTCGGCTgggtcaaatatat

Function

symbol description
tada2b Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human TADA2B (transcriptional adaptor 2B).

NR:

description
PREDICTED: transcriptional adapter 2-beta

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15127 TADA2B; transcriptional adapter 2-beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU189390 False 2334 lncRNA 0.44 2 1482802 1485299
XM_039822937.1 True 3778 mRNA 0.51 2 1482789 1488426

Neighbor

gene id symbol gene type direction distance location
sorcs2 sorcs2 coding downstream 53072 1018258 ~ 1429717 (-)
LOC120573525 mrps28 coding downstream 569109 906545 ~ 913680 (-)
LOC120573590 NA coding downstream 876071 600634 ~ 606718 (-)
LOC120573587 NA coding downstream 1344552 135443 ~ 138237 (-)
LOC120573289 NA coding upstream 3848 1492274 ~ 1500316 (-)
slc1a1 slc1a1 coding upstream 62102 1550528 ~ 1574124 (-)
LOC120573508 LOC103361692 coding upstream 171711 1660137 ~ 1664945 (-)
aco1 aco1 coding upstream 261093 1749519 ~ 1774918 (-)
LOC120573473 NA coding upstream 395476 1883902 ~ 1885687 (-)
G140437 NA non-coding downstream 84 1481738 ~ 1482705 (-)
G140418 grpel1,LOC102799061 non-coding downstream 3976 1468232 ~ 1478813 (-)
G140413 NA non-coding downstream 19924 1461638 ~ 1462865 (-)
G140404 NA non-coding downstream 163214 1290908 ~ 1319575 (-)
G140401 NA non-coding downstream 327847 1154243 ~ 1154942 (-)
G140451 NA non-coding upstream 31395 1519821 ~ 1521839 (-)
G140454 NA non-coding upstream 41809 1530235 ~ 1530950 (-)
G140492 NA non-coding upstream 174595 1663021 ~ 1663252 (-)
G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding upstream 231499 1719925 ~ 1725333 (-)
LOC120573239 NA non-coding upstream 287411 1775837 ~ 1782596 (-)
G140274 NA other downstream 1031119 443550 ~ 451670 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other upstream 134833 1623259 ~ 1649432 (-)
LOC120573528 NA other upstream 438706 1927132 ~ 2032506 (-)
G140615 NA other upstream 563055 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 965640 2454066 ~ 2573483 (-)
arsj arsj other upstream 1109408 2597834 ~ 2622100 (-)

Expression


Co-expression Network