tspan5a (LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072)


Basic Information

Item Value
gene id tspan5a
gene name LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1623259 ~ 1649432 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189451
CGATGACAGGAGGTTGTGTTGATCCCTTCAGGACTCGGAGCAGAAGGACTACATCAACGTGAAGGGCTGCGTGCCGCAGTTTGAGAAGTGGCTGCAGGACAACCTCACCTTGGTGGCCGGGATCTTTATTGGAGTTGCACTACTGCAGATTTTTGGGATTTGTTTGGCCCAAAACTTAGTGAGTGACATCGAAGCTGTGCAGGCGAGCTGtttcttcacctGATGCTGAAGCAGCATTTCAATCCTAACAGCTCCGGGTCTTTGAATGCGCCTCCTTGAACACATCGTCAGCGGAGCGTTCAGAGGACCACGTCGATCACCGGCACCATTTTGTCCACTGAACCAGCACCTTCTTTTCAAGGCACTAATATGTGAAATGCCCTGTATATAACACTGTGTGACTTGTTGTTGCAGAGGATGGTTAAACATGCACTACATGCACGTTGTCACAATGCTCCGGTTTTTATAGCTACGTGTAGAGAGTAGGAGTTTTGATACATCTTTTTGATATTAGATCGGTATTTTTCACTGTGGAAATAACGCTCCATTGCTAAAACCCATCATATAGGACTGTGAAATAGTTGTGTACAAGAACTAAGGATTTGCTTCTTTTAAAGTGGAGTGCTTGCTTTATGTACCTTTCCACCATGTGTATCGGACTGTGCATACGGTGGCGCTAGAGATCAGCTGAATAGTCTCTTGATACTAACTCATCCAGCATGAAAGCGGAAATGACTACAAATTACTCCAATTATTTAGCATACTGAGTTACTAATGGACTAAGGGGTCAGCTAATTGtgatgttattaaaaaaaaaacagttattgGTTGCTATAAGTTTTCCTACTCTCAATACTGACCGTGAAATAATCCCTTCGTAGCTTACCTCACTCTGTATAAAAATGCTTTCCAGAGTTGGAAGCTGAAGCTAAAATCCGGCCGTTTTCAGAGTTAGCCGAATCAGTGTTTGGTCCCAGCGACTAAAAATTAGGATTGGGCATGaagaaccggttccaacttggaatcgtttcaaaagtTACGATTCCACTGGAATAGTTTTTAATTGGAATCTTATGGgaaatttggttttgaatccAACTACAGTTCCAAATTTAAatggtaactactgttttttccaacctggaccctatgttcctatgtgttgtgtctaagtgactgatgggaacaacaatctttgacattggtcctgtattaagagagatcgctgcagtcggcagcagagtaacaagcacttttgtgaaggtaaatacaaactgatcaattgtcctattaacttacattgtagcttgttgtcacttagacacaaaaacatgggaacatagggtccaggttgacaAAAAtcgtagttaccctttaaccaCTGCTTAAACCGAAAGATGTTTCTGGATTTTCagaactgtaaaaaaacaaacttgagaccagacaaaaaaaaaagaaattcactTGGTGAAATATcaggttaaaaaacaaaccgTAGTTACCCTTTTGTTTTCCGTAGCAGCCGCCGTACTtccaggtgcttgttgtgtcACAGAGCGCAAAGCCCTCTAAAGTCTGGctttatttttcattgaaaaagccccgtaaaactgtaaatcaccatgGAACTGGAATCGAGAATTGATAAGAACCAGAATTTGAATCAGAATTGTTGAAATCCAAACAATGCCCGGCCCTACTAAAAAGACCTCAGCTTTAGAAGATAAAGCAAGCCATTTGGCAAACCAAATGCTAGAGGGATTTAGTTTTGACCACTTTAGACGGGAGGAATGATCATGTGACCAATAACGTGAGTACGTTACATTTTTGGTGACGCGGGAAAATATAGGCTTGAAAAatctgaattgttttttttatgaaaaatgtgtcaattgtatttatttcttgAAAAAAGGAATTGGAAAAAGTGAAGTTTTGGCATCTCTACTGAAATTCCAGTATGGAAATCAGCACTTGCACAGGCTGGCCCAGTCCTATCAGGACACATAAAGAAGTTATTGTAATtgttaaggcgctgacacaccaacccgattatcggccgtcggacagtctggcgaggtcagtgactcgagtgtgttcggtgtgttccgtgccgtcgtcagtctgaggagccgtcggccttcatttgggccgatttgacttgttgaatctgaaggcgggcagtcggactcaatggccAATATGAGCGTGActaagcctctcaaaatctgacgaaaatctttcaaactgacctttgtcgatctgaaacgaagacagcaactgcacggccaatttatcgcttaaaatgttttcagaaacatgtttcggtgaactattttagtacaatatgagatatTGTACTAAatgaggtattccgaatgaagcTGGCATTATGCCCGGTTGTAAAgtccgggagcagccagacccacgtgacgcgttcgtccaatcagctgccggttttcatgtttttgggcgacaatacagattagcgccgcctgctgttatggagacgcaTTAGGTCTCAcacacgcgcagaacgtacgctcgagtcggcgtcgcttcggtgtgttccaaggcactttttggaccaactcggggaggagtcagtccgactggctttttctgccgaaggtcggccgtcgggttggtgtgtcggaGCCTTTAAACGGAATAGTGAAccccctttttaaaatatttttaagagTCTGGATAATTATGAAACCCGTTCCAGCTCTGATCCACGTATGGCTACAAAACCAATGCAGTTGTAACCCCCGCTGTCATTTCATATTTTGGTTCTAACCGttgccaaggaggttatgttttcctTGCCAGGTTTACGCAGTTTGGTGGTATTATTTTCATATTCATTTCTGCCCTCACTTGAATGAAAACCAACCTGGCACGTGTTTCCAGTGGCTGTCTTTCACTACGTGTGTTTTGTGGCACATCTGATCAGCACACACATTGAATGAACATCTTTAAATCCATTCTGGATTGAAACCAAATTTGAAATGGAAAGTGCTAAgatgattttaattttttttattctgtttctTTTGATGGTTTAAAGCGATTTGCTCAAAGCATGGatcacttgttttgtttttacagtattgTTTCAGTAAAGTATGTTCAGACTGATGTTGTGGAACTCGTACACTGAATTGTGGTAGTGTTAAGCTACATAAAAAGGGATCATGTGTTTTTGATACTAAATATGTATTGTACATTTGATTTGGTTTTATAACTTCCCTGGTGTATTGGACAGTAAAAACCCATTACTACTGAAGCCGATTTGTCACTATGGAGCTTGTGTTGGGTTGTAAAATGCGGGCGTACCAGGGCCCTGCTGTTTATCACTACCTGTACCACTTGTACAGATTGTTTAGATGATCACAGTTTACCCCACAGACATTGTAATGTAACTACCTCCTCTAATTTCCTTGTCTCATG
>XM_039823147.1
ATCATTGccgaccagcagcagcagcggtacCGCCTCCTGTAGGCGCAATTTGCCCACAACACAGAGGATCGTTTTTATTCTGCGGTTTACTGCGTTTAAGCCCGCTTTATATCTTCTATGCTACGTGTATGAGCGCGTCCTGAACTGCTTCCCCAGCATGGTCCCGACGTGGATCTGAAGCGGCTGGGAGAACATTAGAAGCGGACCAAGTGAAATGCATCCTCGGAGCGCTGAACCTGTTCCACCCCGCCGCACACAAAGCCTGTGAAGCAGGCCGTGTTTTTTCCCTCACGCAGACACCGCGCCGATGATGCTCAAACATGTCGGGGAATCATTACAAAGGCAACGAAGTCAGCTGCTGCATCAAATACTTCATTTTTGGGTTCAACATCCTGTTTTGGCTCCTGGGCATGGCCTTAGTTGGAATTGGACTGTGGGCATGGAGTGAGAAGGGAGTCCTGTCCAACATCTCGTCCATCACAGACCTGGGGGGCCTGGACCCAGTCTGGCTCTTCATGGTGGTCGGGGGGGTCATGTTCATTCTGGGCTTTGCAGGATGCATTGGTGCACTGCGAGAGAACACGTTTCTACTAAAGTTTTTCTCCGTGTTTCTGGGAATCATCTTTTTCTTGGAGCTGACAACGGGAATCCTGGCATTTGTCTTTAAGGACTGGATTAAAGACCAGCTCAACCTGTTCATCAACAATAACATCCGGGCGTACCGCGACGACATCGATCTACAGAACCTCATCGACTTCACTCAGGAATATTGGGAGTGCTGTGGTGCGTTTGGGGCAGACGACTGGAACCTGAACATCTATTTTAACTGTACTGATGGGAATCCCAGTCGGGAAAAGTGTGGAGTTCCCTTCTCCTGCTGCACCAAGGACCCAGCGGAGGATGTAATAAACACTCAGTGTGGATATGACATTCGAGCTAAACCAGACTCGGAGCAGAAGGACTACATCAACGTGAAGGGCTGCGTGCCGCAGTTTGAGAAGTGGCTGCAGGACAACCTCACCTTGGTGGCCGGGATCTTTATTGGAGTTGCACTACTGCAGATTTTTGGGATTTGTTTGGCCCAAAACTTAGTGAGTGACATCGAAGCTGTGCAGGCGAGCTGGgtgccccctcctctctccatgcGTCGCCTCCCACCACACTCCAGCAAGAAAGCATCGGCTTACTACTCatgagacacagaaacacatgcgctgtgtgtgtttgtagccgtttcttcacctGATGCTGAAGCAGCATTTCAATCCTAACAGCTCCGGGTCTTTGAATGCGCCTCCTTGAACACATCGTCAGCGGAGCGTTCAGAGGACCACGTCGATCACCGGCACCATTTTGTCCACTGAACCAGCACCTTCTTTTCAAGGCACTAATATGTGAAATGCCCTGTATATAACACTGTGTGACTTGTTGTTGCAGAGGATGGTTAAACATGCACTACATGCACGTTGTCACAATGCTCCGGTTTTTATAGCTACGTGTAGAGAGTAGGAGTTTTGATACATCTTTTTGATATTAGATCGGTATTTTTCACTGTGGAAATAACGCTCCATTGCTAAAACCCATCATATAGGACTGTGAAATAGTTGTGTACAAGAACTAAGGATTTGCTTCTTTTAAAGTGGAGTGCTTGCTTTATGTACCTTTCCACCATGTGTATCGGACTGTGCATACGGTGGCGCTAGAGATCAGCTGAATAGTCTCTTGATACTAACTCATCCAGCATGAAAGCGGAAATGACTACAAATTACTCCAATTATTTAGCATACTGAGTTACTAATGGACTAAGGGGTCAGCTAATTGtgatgttattaaaaaaaaaacagtta
>XM_039823148.1
ATCATTGccgaccagcagcagcagcggtacCGCCTCCTGTAGGCGCAATTTGCCCACAACACAGAGGATCGTTTTTATTCTGCGGTTTACTGCGTTTAAGCCCGCTTTATATCTTCTATGCTACGTGTATGAGCGCGTCCTGAACTGCTTCCCCAGCATGGTCCCGACGTGGATCTGAAGCGGCTGGGAGAACATTAGAAGCGGACCAAGTGAAATGCATCCTCGGAGCGCTGAACCTGTTCCACCCCGCCGCACACAAAGCCTGTGAAGCAGGCCGTGTTTTTTCCCTCACGCAGACACCGCGCCGATGATGCTCAAACATGTCGGGGAATCATTACAAAGGCAACGAAGTCAGCTGCTGCATCAAATACTTCATTTTTGGGTTCAACATCCTGTTTTGGCTCCTGGGCATGGCCTTAGTTGGAATTGGACTGTGGGCATGGAGTGAGAAGGGAGTCCTGTCCAACATCTCGTCCATCACAGACCTGGGGGGCCTGGACCCAGTCTGGCTCTTCATGGTGGTCGGGGGGGTCATGTTCATTCTGGGCTTTGCAGGATGCATTGGTGCACTGCGAGAGAACACGTTTCTACTAAAGTTTTTCTCCGTGTTTCTGGGAATCATCTTTTTCTTGGAGCTGACAACGGGAATCCTGGCATTTGTCTTTAAGGACTGGATTAAAGACCAGCTCAACCTGTTCATCAACAATAACATCCGGGCGTACCGCGACGACATCGATCTACAGAACCTCATCGACTTCACTCAGGAATATTGGGAGTGCTGTGGTGCGTTTGGGGCAGACGACTGGAACCTGAACATCTATTTTAACTGTACTGATGGGAATCCCAGTCGGGAAAAGTGTGGAGTTCCCTTCTCCTGCTGCACCAAGGACCCAGCGGAGGATGTAATAAACACTCAGTGTGGATATGACATTCGAGCTAAACCAGACTCGGAGCAGAAGGACTACATCAACGTGAAGGGCTGCGTGCCGCAGTTTGAGAAGTGGCTGCAGGACAACCTCACCTTGGTGGCCGGGATCTTTATTGGAGTTGCACTACTGCAGATTTTTGGGATTTGTTTGGCCCAAAACTTAGTGAGTGACATCGAAGCTGTGCAGGCGAGCTGtttcttcacctGATGCTGAAGCAGCATTTCAATCCTAACAGCTCCGGGTCTTTGAATGCGCCTCCTTGAACACATCGTCAGCGGAGCGTTCAGAGGACCACGTCGATCACCGGCACCATTTTGTCCACTGAACCAGCACCTTCTTTTCAAGGCACTAATATGTGAAATGCCCTGTATATAACACTGTGTGACTTGTTGTTGCAGAGGATGGTTAAACATGCACTACATGCACGTTGTCACAATGCTCCGGTTTTTATAGCTACGTGTAGAGAGTAGGAGTTTTGATACATCTTTTTGATATTAGATCGGTATTTTTCACTGTGGAAATAACGCTCCATTGCTAAAACCCATCATATAGGACTGTGAAATAGTTGTGTACAAGAACTAAGGATTTGCTTCTTTTAAAGTGGAGTGCTTGCTTTATGTACCTTTCCACCATGTGTATCGGACTGTGCATACGGTGGCGCTAGAGATCAGCTGAATAGTCTCTTGATACTAACTCATCCAGCATGAAAGCGGAAATGACTACAAATTACTCCAATTATTTAGCATACTGAGTTACTAATGGACTAAGGGGTCAGCTAATTGtgatgttattaaaaaaaaaacagtta

Function

NR:

description
PREDICTED: tetraspanin-5 isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189451 True 3456 lncRNA 0.42 4 1623259 1639611
XM_039823147.1 False 1847 mRNA 0.48 11 1625891 1649432
XM_039823148.1 False 1737 mRNA 0.48 10 1625891 1649432

Neighbor

gene id symbol gene type direction distance location
slc1a1 slc1a1 coding downstream 49135 1550528 ~ 1574124 (-)
LOC120573289 NA coding downstream 122943 1492274 ~ 1500316 (-)
sorcs2 sorcs2 coding downstream 193542 1018258 ~ 1429717 (-)
LOC120573525 mrps28 coding downstream 709579 906545 ~ 913680 (-)
LOC120573590 NA coding downstream 1016541 600634 ~ 606718 (-)
LOC120573508 LOC103361692 coding upstream 10705 1660137 ~ 1664945 (-)
aco1 aco1 coding upstream 100087 1749519 ~ 1774918 (-)
LOC120573473 NA coding upstream 234470 1883902 ~ 1885687 (-)
LOC120572242 NA coding upstream 370180 2019612 ~ 2022367 (-)
pde5ab pde5a coding upstream 1029513 2678945 ~ 2797531 (-)
G140454 NA non-coding downstream 92309 1530235 ~ 1530950 (-)
G140451 NA non-coding downstream 101420 1519821 ~ 1521839 (-)
G140437 NA non-coding downstream 140554 1481738 ~ 1482705 (-)
G140418 grpel1,LOC102799061 non-coding downstream 144446 1468232 ~ 1478813 (-)
G140413 NA non-coding downstream 160394 1461638 ~ 1462865 (-)
G140492 NA non-coding upstream 13589 1663021 ~ 1663252 (-)
G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding upstream 70493 1719925 ~ 1725333 (-)
LOC120573239 NA non-coding upstream 126405 1775837 ~ 1782596 (-)
G140534 NA non-coding upstream 137872 1787304 ~ 1788089 (-)
G140535 NA non-coding upstream 141278 1790710 ~ 1790942 (-)
tada2b tada2b other downstream 134833 1482789 ~ 1488426 (-)
G140274 NA other downstream 1171589 443550 ~ 451670 (-)
LOC120573528 NA other upstream 277700 1927132 ~ 2032506 (-)
G140615 NA other upstream 402049 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 804634 2454066 ~ 2573483 (-)
arsj arsj other upstream 948402 2597834 ~ 2622100 (-)
LOC120573530 NA other upstream 1489689 3139121 ~ 3143189 (-)

Expression


Co-expression Network