G140559


Basic Information

Item Value
gene id G140559
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1834599 ~ 1882455 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189568
gtttgttcactgtttaaataaagctgcacttgatttgtactcttcggactggtcgtcatctcTGAGGTCTCCCTACATCATTTCTGAATCATCACCCGATATCATTTGGCGTCACTGAACATGTGCAGATTCAGCGAAAGGTGAGTAGATGTCTATTCTTGTTGAATGGAATTTGCTCCCTTTTGTTGCATATCTGTAAAAGAACCGGGTGTGGGAATTGAAATGAGGGAGACATGATTTGGCTGTGAAATTATTAATTGGGTTATACTAAAATGGATGAAAttccaaaatgtttaaatggtgTTTGAATTGTTGAAGCTGTTGCCATAATCAAATCTAACCTGTGACAAAGTGTTGCGCAACACGATTAGATAGATTGTGTGTGAGGTTATTTGAATATTCGGGTCGCTTTTAGCTGACAGTGGTAAGACCAACGTATGGTGAAGCGTTGAGGGACAGAGACgtatctgtta

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0051276 chromosome organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189568 True 473 lncRNA 0.40 2 1834599 1882455

Neighbor

gene id symbol gene type direction distance location
aco1 aco1 coding downstream 59681 1749519 ~ 1774918 (-)
LOC120573508 LOC103361692 coding downstream 169654 1660137 ~ 1664945 (-)
slc1a1 slc1a1 coding downstream 260475 1550528 ~ 1574124 (-)
LOC120573289 NA coding downstream 334283 1492274 ~ 1500316 (-)
sorcs2 sorcs2 coding downstream 404882 1018258 ~ 1429717 (-)
LOC120573473 NA coding upstream 1447 1883902 ~ 1885687 (-)
LOC120572242 NA coding upstream 137157 2019612 ~ 2022367 (-)
pde5ab pde5a coding upstream 796490 2678945 ~ 2797531 (-)
si:dkey-219e21.4 NA coding upstream 930100 2812555 ~ 2818659 (-)
c14h4orf54 NA coding upstream 1234779 3117234 ~ 3128616 (-)
G140536 NA non-coding downstream 42937 1791040 ~ 1791662 (-)
G140535 NA non-coding downstream 43657 1790710 ~ 1790942 (-)
G140534 NA non-coding downstream 46510 1787304 ~ 1788089 (-)
LOC120573239 NA non-coding downstream 52003 1775837 ~ 1782596 (-)
G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding downstream 109266 1719925 ~ 1725333 (-)
G140572 NA non-coding upstream 10954 1893409 ~ 1893793 (-)
G140597 NA non-coding upstream 18572 1901027 ~ 1905267 (-)
G140601 NA non-coding upstream 24790 1907245 ~ 1908644 (-)
LOC120572355 NA non-coding upstream 56012 1938467 ~ 1941368 (-)
G140603 NA non-coding upstream 77189 1959644 ~ 1963832 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other downstream 185167 1623259 ~ 1649432 (-)
tada2b tada2b other downstream 346173 1482789 ~ 1488426 (-)
G140274 NA other downstream 1382929 443550 ~ 451670 (-)
LOC120573528 NA other upstream 44677 1927132 ~ 2032506 (-)
G140615 NA other upstream 169026 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 571611 2454066 ~ 2573483 (-)
arsj arsj other upstream 715379 2597834 ~ 2622100 (-)
LOC120573530 NA other upstream 1256666 3139121 ~ 3143189 (-)

Expression


Co-expression Network