ablim2 (ablim2)


Basic Information

Item Value
gene id ablim2
gene name ablim2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2828052 ~ 2954690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189858
AGTGGGGGACAGAGCGCTCACTATTATTACACCAGAGCTGCAGAGAGTGCGGACGATGTCTTGCAACACCACCAGAGGACTCTGAACAGATTTTTGGGATATTGTCTATATAACTATCACTAAAGGACGTGACAAGATATCACATTTGGGAAAACAGCTGAGTGACAATGCCAGAGGAGAAAGTGTTTCAGCAGCAGGCTGTCCACAGCCCTCTGGAGCAGCAGAAGCAGAAAGCAAATCAGGGCGGAGGAAGACCTATCCCCTGTCAGAACTGTGGGAAGCCATGCAAAGGGGAGGCTCTCCGCGTCCAGAACAAACACTTCCACATCAAGTGCTTCGCTTGTAAAGTATGTGGAACTGAACTGGCCCAGGGAGGTTTCTTTGTGCGGCAGGGTGAATACATCTGTACTCTGGACTACCAGCGGCTGTACGGGACTCGCTGCTTCAGCTGCCAGGACTTCATAGAGGGGGAGGTGGTGTCGGCCCTGGGGAAGACCTACCACCCCCGCTGCTTCGTCTGCGCCTCCTGCAAACAACCTTTCCCAGCCGGCGACCGGGTGACATTTAATGGGAAGGAGTGTATCTGCCAAAAATGTACCCAGCCTCTCCCTGCCAACAGCCCTGCACCCATACAGGCTGTCCACAACTGCTGCGGCTGTGGGAAGGAGTTTAAGAATGAACAGTCTCTTGTAGCGCTGGACAAGCACTGGCACCTGGGCTGCTTCAAATGTAAAGTCTGCAACAAGGTGCTCAATGCCGAGTACATCAGCAAGGATGGAATCCCCTACTGTGAGATGGACTACCACGCCATGTTCGGCATCCAGTGTGAGAG
>TU189860
ACACCCATCCACCGTGCACTGTCACCGTGCGCTGCAGTGTCTGCGGGACTTTGTCTTCTCAGTGCGGCGGTGTCGGGACATCTCTGCGGCATCGGCAGCCAGGACAACCGGGCAAAGCTCTCTCCGCAACGCTCCCGTGTAAACACTTGTCTTCATCCATCCTGCTGGCTGGCACTGAGGCGTGTGCGCTCTGCGGCTGCGGGCATCTtccatgtcctgtcctgtcagTGTGGATAGTGGCTTATTGACTGTGCATCATCTGACTGGAGAAGACATCTGGCTGGCACCATGAGCAGCACTGTGTTTCAGCAGCAGGCTGTCCACAGCCCTCTGGAGCAGCAGAAGCAGAAAGCAAATCAGGGCGGAGGAAGACCTATCCCCTGTCAGAACTGTGGGAAGCCATGCAAAGGGGAGGCTCTCCGCGTCCAGAACAAACACTTCCACATCAAGTGCTTCGCTTGTAAAGTATGTGGAACTGAACTGGCCCAGGGAGGTTTCTTTGTGCGGCAGGGTGAATACATCTGTACTCTGGACTACCAGCGGCTGTACGGGACTCGCTGCTTCAGCTGCCAGGACTTCATAGAGGGGGAGGTGGTGTCGGCCCTGGGGAAGACCTACCACCCCCGCTGCTTCGTCTGCGCCTCCTGCAAACAACCTTTCCCAGCCGGCGACCGGGTGACATTTAATGGGAAGGAGTGTATCTGCCAAAAATGTACCCAGCCTCTCCCTGCCAACAGCCCTGCACCCATACAGGCTGTCCACAACTGCTGCGGCTGTGGGAAGGAGTTTAAGAATGAACAGTCTCTTGTAGCGCTGGACAAGCACTGGCACCTGGGCTGCTTCAAATGTAAAGTCTGCAACAAGGTGCTCAATGCCGAGTACATCAGCAAGGATGGAATCCCCTACTGTGAGATGGACTACCACGCCATGTTCGGCATCCAGTGTGAGAG
>TU189873
CTATTTAGCCACAAAAGCATAGTGAGGTCTAACACTGATAATGTAGACCGAACCACTGAAGTTATATCAAAGTTCATTTTTACTTGCGAACATAACAAGGAGCCAGTTACAGTACTCACAGCATAAGTACAGAAGTAACTAACGTAAGCCTCAAACAGTAGCTTATTTATGTGTGAAATACAATCATAATACAGAGTTGATGTCGTCAGCTGTTATCTTGTAAGAGTCGATGACGTCTCCCTTATCTGGTCAGGGAGTGAATGTTagatggggggggggggacataacatacagtacagtacagtttcAGGGCTTCAGGGTGTGTAAAGGTGTCAAACGTGCAGGATTGCCAGAGACGCGTGCCCTCACATCACACAAACaattgaaattatttttataagctatttttgacttgtcattaAATCATGAGATGCAGCTGAGAGAAATCATGATTTTgttaccagaaaaaaaaaagcccatgcTGACTTTGTTAAGCTTCACAGACCTGCAGCAGCACTTACGCATAACAAGTGGGGTCTTGCTTGATTTGAAACCCAATACTCTAGCTGTGTTATATCTTCTCAGATAAAGATTTAACTCTTTGGATGTATGTTGTTTGCGAGCATTGTTGCGTACAGTAAAAGCTCCACATTTAAGCTGAAGTCCAGCAGCTTTGCTTGATGATTTCTGAACCGTAAATCGATCAACGCGCCAACTTACATACTGCAAGATGTATGTGAACATATAGTGGACATATACCAGATATATTTGTCTGTGTACAAGCCATTATGTATAACTCTTCAGCCATGCATGAGGATAGGTAATGGGGTTTGAAATGTATGAAAACATTATCATCAATGTGGTTTGAGTGATTCGTTATTTTCTGGTTAAACTGAAATGCCCGGGTCAGCTGCTTACATTAGGCTGTGTTaggtatttatttaattgtattgagaaagggattttattttgaaatcttaAGGGTGTAGTGTTGAATGAATAGCATCAGAGAAGAGAGATTTTTGAAGAGAAACATATCAAATGTTGAGTTTAATCTGAGTGTCAAATCAATGTTGCTCCTGTAAGTAACACACTAACTGTTGTTATAAAGCGTCATGTCCTTTCTAATATTCATCTGCTATTAAAGTGCTTTATCCAAACTACAGAGTCCC
>XM_039821737.1
TGACCTACAGCTCATTCCAGAGATAGTGGGGGACAGAGCGCTCACTATTATTACACCAGAGCTGCAGAGAGTGCGGACGATGTCTTGCAACACCACCAGAGGACTCTGAACAGATTTTTGGGATATTGTCTATATAACTATCACTAAAGGACGTGACAAGATATCACATTTGGGAAAACAGCTGAGTGACAATGCCAGAGGAGAAAGTGTTTCAGCAGCAGGCTGTCCACAGCCCTCTGGAGCAGCAGAAGCAGAAAGCAAATCAGGGCGGAGGAAGACCTATCCCCTGTCAGAACTGTGGGAAGCCATGCAAAGGGGAGGCTCTCCGCGTCCAGAACAAACACTTCCACATCAAGTGCTTCGCTTGTAAAGTATGTGGAACTGAACTGGCCCAGGGAGGTTTCTTTGTGCGGCAGGGTGAATACATCTGTACTCTGGACTACCAGCGGCTGTACGGGACTCGCTGCTTCAGCTGCCAGGACTTCATAGAGGGGGAGGTGGTGTCGGCCCTGGGGAAGACCTACCACCCCCGCTGCTTCGTCTGCGCCTCCTGCAAACAACCTTTCCCAGCCGGCGACCGGGTGACATTTAATGGGAAGGAGTGTATCTGCCAAAAATGTACCCAGCCTCTCCCTGCCAACAGCCCTGCACCCATACAGGCTGTCCACAACTGCTGCGGCTGTGGGAAGGAGTTTAAGAATGAACAGTCTCTTGTAGCGCTGGACAAGCACTGGCACCTGGGCTGCTTCAAATGTAAAGTCTGCAACAAGGTGCTCAATGCCGAGTACATCAGCAAGGATGGAATCCCCTACTGTGAGATGGACTACCACGCCATGTTCGGCATCCAGTGTGAGAGTtgtgaaaaactctgtcactaccttgttagccggttcctgaAGGCTGGAGAGAAGCACTACCACCCTGCATGTGCCCGCTGTGCCCGCTGTGAGCAGATGTTTGCAGAGGGAGAAGAAATGTACCTGCAAGGATCTACCATCTGGCATCCTCCATGCAGACAAGCAGCCAAGCTGGAGGAGAAGAGTAAGgtgacCCGGACTTCATCTGAGAGCATTACTTCAGTCCCAGCATCCAGCGCCTCAGGCTCTCCCAGCAGAGTCATCTATGCCAAACTAGGAGAGGAAATGCTGGACTACAAGGACCTGGCGGCTCTTCCAAAGACCAAGGCCATCTATAACATAGACAGGCCGGACATGCTGTCCTACTCTCCATATGTCAGCTACCCGTCTGAGGAAAGGCACTATGGAGAGACCCCCCAGCTGCTTTCTCCTACTCCTACTGAGGGCGATGGGGAGAAGTCCCCCCGTCAGAGGAGGCCTTCCAGCCCCAGCTCCAACAGCTCCCTGGGGGGCTACGGACGGTACACCCCGTGTCGTTCCCCCACCAATTACAGCCGACCAGGGCCAGAGGTGTACCTTGGTGGTAGACACAGCACCCAGGCCTGTGACTCCAGTTCTCTTGATTTGCCTCCAAACCTCCTGGGTGCCATTAAGTACCCCTCCACCTGGGCCAGGGACTCATCTTCCCTCCCTGTGCACTGTTCTACTGGGGCTGAagggagtggtggtggtggtggcaaGTTCTCGCCCACACCAGTAGGTGGCAGTGCAGGCTTGTCTTTTCACCTGAACCCGACCACCCTGGCCATGCTGCAGCAGCACAACTACATCCCTTACTTCAGAGGAAGTGAAAGTGGTCGGAGTACCCCCAGCTTATCCACCTATTCTGATGGCAAATCCCCTTCCTCTACTTCTACATATGTGGCTGCTCCCCGGCATTTCCACGTACCAGAGACTCTGGTCAAAGATAATCTTTATAGAAAACCCCCCATCTACAAACAGCATGCTTCTAGAACATCCTGGCAGGATGGGGAGGATGGCAagaggACCAGTTGGATGATCTTGAAGAGTGAGATTGATGGACAGATTGGTCCTGAAGACCTGGACCCCCGCAAATCGACCTGCAGTCTGCCCACTGACACCTCCCAGCCTAATTTCCCCTACAATAAGTCTGCATCCTTACCCGGCTATGGAAGGAACGGCATCTACAAGGCTGCTGAGATGGTGGAGGATGAAGTGGACCCACACTCTGAGAGCTGGGGAGTCATGAGAgaATACAAGATCTACCCTTATGAGATTCTGGCAGTGACGCATAGAGTGAAGGTGAAGCTTCCCAGAGAAGTAGATCGCACCCGACTGGAGAGACACCTATCTCCTGAGGACTTCCAGCAGGTTTTCGGCATGACCCTGGAGCAGTTTGACCGCCTGGCCCTCTGGAAGAAGAACGACCTGAAGAAGAGGGCACGCCTTTTTTAGACCGAAGGAAAATGATCTCAACATGCATGCATCCAGTGTGGGAGGAAGCACAAAAGAAAGCCAACCCATTTGAAATctctacatacagtatgcacCGCCATGATAGCCCTACTTCCACCTGTAAACCGCCATCTGCCTGTGACGCCGCGGGGAGGCGCTCCGTGCCCGAACATTTCCACGATGTTGAGGCAGCAACTAGAGCTTTTTGTATGCTATGTGGTGCCAATGTTTGATCGACAGCCTCGCAGAAGAGGGCGAGGAGCTGCGTTTGCATGGCCTGTGTTGATGCTCCTCGCCTCCCGTGTGGTTTCTGCGTCCTCCCCGGCCCATCTGGATGCTTTCATACACCCTGGCAAAATAATGACTTACACATTACAAACTAGTTCTCATGCAGGCCTTCCCCCTGGTTGCTGTGGTCCAGACTGTTACATACACACCTTCTTTTACTTCACCTTACCActggtttcttttatttttttaaactgttttttttttttattcaacacacaatacagagataCAATACAGAGAATATACAACTTGGAGGAGATGCTTACACCTTACCGGTTTCTATCTTGAGTTTTTCATCAGTAACtcgtttgtttttcattgtctAATCTGTCTCTACACATCATTTGTTTGCTGCTCTGCCttttctctctcgctgtctctccaTCGTTTTAAGTTTTCTCCCTCCACTGAGTGACTTTTACATTGTCGAGGCAGTCCATTTTTACACCCGCCATTACTTCATGGACGGTGAAGAGACTGCACAGTCACTGTGCAAGCATGTCAAGGCCAAAGACGGGGATAAGAAACGACTCCAACTTCTGGGATCTCTTTCTTCAAAAACTGTCAAAAGCCCCTTGTCATACACTTTTGTTTTCAATTttccttcatgtttttttttctatcagtGAAGTTGAGAAAGTCTGGCCGGGTAGTTTCGATGTGCCGTCCCATTTCTTATATAAACATCTGGTAAATCAGCACGGATAGCGGAGCCCAGGCTGGAAAGAGGCCACAATATGGCAGTGAATcacagatggggggggggggacataacatacagtacagtacagtttcAGGGCTTCAGGGTGTGTAAAGGTGTCAAACGTGCAGGATTGCCAGAGACGCGTGCCCTCACATCACACAAACaattgaaattatttttataagctatttttgacttgtcattaAATCATGAGATGCAGCTGAGAGAAATCATGATTTTgttaccagaaaaaaaaaagcccatgcTGACTTTGTTAAGCTTCACAGACCTGCAGCAGCACTTACGCATAACAAGTGGGGTCTTGCTTGATTTGAAACCCAATACTCTAGCTGTGTTATATCTTCTCAGATAAAGATTTAACTCTTTGGATGTATGTTGTTTGCGAGCATTGTTGCGTACAGTAAAAGCTCCACATTTAAGCTGAAGTCCAGCAGCTTTGCTTGATGATTTCTGAACCGTAAATCGATCAACGCGCCAACTTACATACTGCAAGATGTATGTGAACATATAGTGGACATATACCAGATATATTTGTCTGTGTACAAGCCATTATGTATAACTCTTCAGCCATGCATGAGGATAGGTAATGGGGTTTGAAATGTATGAAAACATTATCATCAATGTGGTTTGAGTGATTCGTTATTTTCTGGTTAAACTGAAATGCCCGGGTCAGCTGCTTACATTAGGCTGTGTTaggtatttatttaattgtattgagaaagggattttattttgaaatcttaAGGGTGTAGTGTTGAATGAATAGCATCAGAGAAGAGAGATTTTTGAAGAGAAACATATCAAATGTTGAGTTTAATCTGAGTGTCAAATCAATGTTGCTCCTGTAAGTAACACACTAACTGTTGTTATAAAGCGTCATGTCCTTTCTAATATTCATCTGCTATTAAAGTGCTTTATCCAAACTA

Function

symbol description
ablim2 Predicted to enable actin filament binding activity. Predicted to be involved in lamellipodium assembly. Predicted to act upstream of or within actin cytoskeleton organization and transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in actin cytoskeleton. Orthologous to human ABLIM2 (actin binding LIM protein family member 2).

NR:

description
PREDICTED: actin-binding LIM protein 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189858 False 832 TUCP 0.53 6 2857755 2903571
TU189860 False 950 TUCP 0.57 6 2828052 2903571
TU189873 False 1172 lncRNA 0.38 2 2898796 2954690
XM_039821737.1 True 4274 mRNA 0.48 23 2857731 2954681

Neighbor

gene id symbol gene type direction distance location
zcchc4 LOC104953644,LOC104953641 coding upstream 4037 2808900 ~ 2824015 (+)
mad2l1 mad2l1,LOC102790739,LOC103155071,LOC106941438 coding upstream 158921 2664689 ~ 2669131 (+)
ank2b ank2,LOC103361685,LOC107384730 coding upstream 377810 2278934 ~ 2450242 (+)
LOC120572444 NA coding upstream 617493 2210208 ~ 2210559 (+)
LOC120572142 NA coding upstream 725680 2038970 ~ 2102372 (+)
afap1 afap1 coding downstream 1658 2956348 ~ 3108934 (+)
hacd4 hacd4 coding downstream 202104 3156794 ~ 3167756 (+)
LOC120572274 NA coding downstream 507731 3462421 ~ 3470210 (+)
lrch4 lrch4 coding downstream 738348 3693038 ~ 3787295 (+)
LOC120573426 NA coding downstream 1195228 4149918 ~ 4158154 (+)
G140763 NA non-coding upstream 2185 2824674 ~ 2825867 (+)
G140746 NA non-coding upstream 30530 2797252 ~ 2797522 (+)
G140741 NA non-coding upstream 97945 2729774 ~ 2730107 (+)
G140740 pde5a non-coding upstream 102395 2710706 ~ 2725657 (+)
G140738 NA non-coding upstream 142897 2684519 ~ 2685155 (+)
G140770 NA non-coding downstream 154424 3109114 ~ 3112461 (+)
G140820 NA non-coding downstream 257953 3212643 ~ 3213025 (+)
G140836 NA non-coding downstream 480770 3435460 ~ 3435678 (+)
G140837 NA non-coding downstream 481162 3435852 ~ 3436138 (+)
G140839 NA non-coding downstream 482847 3437537 ~ 3437984 (+)
G140613 NA other upstream 768685 2055439 ~ 2059367 (+)
G140594 NA other upstream 795827 2022592 ~ 2032225 (+)
G140582 NA other upstream 797425 1929623 ~ 2030627 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other upstream 1102584 1677210 ~ 1725468 (+)
LOC120572292 NA other upstream 2205017 621116 ~ 623035 (+)
mllt3 mllt3 other downstream 301823 3256513 ~ 3433803 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other downstream 1358461 4313151 ~ 4315545 (+)
G141060 men1 other downstream 1485948 4440638 ~ 4444947 (+)
G141063 NA other downstream 1529002 4483692 ~ 4487607 (+)
trnaw-cca_15 NA other downstream 3282313 6237003 ~ 6237074 (+)

Expression


Co-expression Network