XLOC_004818 (slc35f3a)


Basic Information

Item Value
gene id XLOC_004818
gene name slc35f3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30723178 ~ 30756585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009518
ACCGCCTCTATTCATTAAATATGCTGAGATGAGATTTGGTGCCACCTGCGGTCATCTTACCCTCCAGCTCCCCTTCAAGTGAACCAACTATTGAACACCGCAGGTGTTATATATAAACGTCTCCTTTTGCCTTTGCCTTTGGATCGTCCTTGATAAATGCGAATAATCTCCACCAGAGCGCTTCGACAGTTCTCACCCAAGATTTTTCAATTAAACTCCCTCTCCCATGGCCTGTGTTTATCCAAGCTTCATTAGATGTCAGGTCTCGCTACAGTGTGTGCCAAGCTCAATTTGAAGTTAAGCATATGCAGGGCAGACCTCATGGCTTCTCCCCATGGTGTTTTCCAACGGGAGGGTATTGACGGCGCTGTCAGAAGTTTTTGCTTAGCTAAGCTCAGGTCCAGACTGAGGCTTGTGCTGGGGTAGAGACGCTGCTTCCGATCGATAGGTGCCAACCAGTTACAATGAAGTCCTGTTcgctcaccacacacacacacatacagactgtGGCTCACACCCCCACTGCTAGCCATCTTTCAAAAACTGGCTGTGGAGCGTGAAGCTGCCACACTGCAGGGATAAATCCCCACACATGATGTGCCGGCGCAATGCAGAAAGAGGACGAGACTCCACTACAGCTACAGGGTCCTCAGAAAGACAGGGGAATGAGAAAGCCATCGGACATGAGTCCGCGCCGCCTGTCAGATATCAGTCCTCAGATCAGACAGCTGAAGTCCCTCGTCCTTGATGAAGATCTGAATGAAGAGTTAAAGTCGTCGAGATCCGTCGAGTACATCCAAAATGCCTCCATAGAAGAGCGGATACTGAGGATCACTGGCTACTATGGCTATGAGCCTTGGAGCGCATCTGTTAGAGGGGAGGAGCAGTCCAGCAGTGAGAAGGTGGAAGTGAAGGTGGATGGTCATTCTGGGACAGCCTTATTAGATTGTGCAGACAGGTTGCAGAGGCTCCGCTGCTGTTTGCATTTGACTGCGGTGCATCTACGCGGAGCACTGTGGGGTGTCGCTATGGTCATCTGCATCTGCATGTCTTGGTCAGGAAGCACTCAGTTGGCCAAAATAACTGTTAGACGCTTGAATATCCCATTCACCCTCACTTGGTTCTCCACCTCCTGGAACTGTGCCATCTTCCCCGTCTACTACCTGGGTCACCTGTGCTGGAGCAAGGACAGACAGACCCCCAGACAGCGCTTTAGAGAGTGTTGTCAGTTTCTGGGAGATGACGGCTTGTCTCTGAAGATGCTGCTCTCTCGGGTGGCTCCCTTTGGAGTCTTGTGGACTCTCACCAGCTACTTATACCTGCAAGGCCTTCGCAGAATCCCTGCCACTGATGCCTGTGCGCTGTTCTGCTGCAGTCGTGCCTTTGTCTTCCTCATATCCTGGATCGTCCTGCGGGATCGCTTCATGGGAGTAAGGATTGTGGCGGCCGTTTTAGCCATCGGTGGGATTGTTATGATGACATATGCCGACGGTTTCCACAGTTACTCTGTGATCGGCATCTCACTTGTCGTTGGGTCTGCATCTACAGCAGCTATTTACAAAGTTCTTTTCAAGCTTGTTTTGGGTAGTGCGAAGCTGGGTGAAGCGGCGGTGTATCTTACCATTCTCGGCGGAGCTAATTTGATCTTCATTAGCGCTGTACCTCTCATACTGCTGCTCACAGGGGCAGAGGACTTCATTTCACCTAGAGATTTACCCTGGTCAAGCATATGTGGCATGTCTGCTTTACTACTGGTGTTCAACTTCCTGTTGAATTGTGGTGTTTTGATAACACTTCCTACTCTGATTTCTCTGGGTGTTGTCCTCAGTGTGCCGGTCAATGCTGTCATAGATCGCTACATGTATGACATCCAGCTCAACAGCGTGCGCGTCATTGCGGTATCCATCATCTGTCTGGGCTTTCTTTTGCTCCTGCTGCCCGAGGACTGGGACCAGTGCCTGCCGCAATTGCGATCAATCCTGCACAGCCGAAGACAACCACAAGAGAGCGCCAGAGACAAACACTCAGAGATGCTTCATATACGACCCAGAGAGGCCAAAAACTGCAACTCCAAAACTACCGGTGTCCGCTGAATCCCCGTTTGATTCAATCCACGAGCTTCGTATGGGAAAACAACTCCTTTAATGACTCTCTTGGACATACATGATGCGCATCAAGTAATTGAATGGGAATAACTACGCTGAGAAATATCAATAAAGGAAGGTGCTATCCCTAGAATATTAGAAAACTGACTAATTCTATGCAAAGCTTTAAGATTTGATTGTTTCTGTACTGTCAATGATGagtaagttatttttttaagcacAACCATGTGAGTTTGgaaatttgtatatttaattgcCGCTTGAagtatatttggtaacactttaggtcacaattcacagtattaacaaaccatgAACTAACACTACAAGCGTAATAAATGACTAATTAGCTGCTTTCCTATTAATAGTTAGTagggtagaagttgggtttaggttttgggtaggataagggatgcagaataagatcatcctttaacaaacggctaatatcctaataatagacaggtaataaaCCAGTAGTTATTAGCATGacttgtgacctaaactaaagtgttaccgtatATTTGCCAATATATTCACTGCAAAAATATTCCTAATGAATAAGCCCATCTATACTCACACTGGGTCTATGCATCATTAATATGTATATGCCCGTGTTATTGCCTCTTGTGTGATCTGTAAGAAAGGCTATTGCTATTGATTCATCATCAGATTAATCTCTTATGTTGTATCTTTATCAGTGGCAATATTTTGTTCATATATTCCTGTGGAATTAAGGCTTGATATAAACCTTTGTAAGGATTTTTGTTACTTCTCAATAGCAATAATAATCAAGAATCAATGTGTATCTCATGCATACTGTCGC
>TCONS_00009519
CCGGCGCAATGCAGAAAGAGGACGAGACTCCACTACAGCTACAGGGTCCTCAGAAAGACAGGGGAATGAGAAAGCCATCGGACATGAGTCCGCGCCGCCTGTCAGATATCAGTCCTCAGATCAGACAGCTGAAGTCCCTCGTCCTTGATGAAGATCTGAATGAAGAGTTAAAGTCGTCGAGATCCGTCGAGTACATCCAAAATGCCTCCATAGAAGAGCGGATACTGAGGATCACTGGCTACTATGGCTATGAGCCTTGGAGCGCATCTGTTAGAG
>TCONS_00009520
GCGCATTGAGTTCACAGGTGGTCGTGTCTTCGTATCTCCATCCGCCCCAGCGTTCTGGATGCCCTTCTGACATTGTACAATTTATAAACGCTTGATTCTTAAGCTACTTTTTAAAATGGGCTCATCAGAATGTCGACTGAAGCAGCACATCTCTGTGTCAGAGGGAATGAGAAAGCCATCGGACATGAGTCCGCGCCGCCTGTCAGATATCAGTCCTCAGATCAGACAGCTGAAGTCCCTCGTCCTTGATGAAGATCTGAATGAAGAGTTAAAGTCGTCGAGATCCGTCGAGTACATCCAAAATGCCTCCATAGAAGAGCGGATACTGAGGATCACTGGCTACTATGGCTATGAGCCTTGGAGCGCATCTGTTAGAGGTACTGCGCTTAAATGTAAGATGTTTTATAAGcgaaaaaaa
>TCONS_00009521
AAAATGGGCTCATCAGAATGTCGACTGAAGCAGCACATCTCTGTGTCAGAGGGAATGAGAAAGCCATCGGACATGAGTCCGCGCCGCCTGTCAGATATCAGTCCTCAGATCAGACAGCTGAAGTCCCTCGTCCTTGATGAAGATCTGAATGAAGAGTTAAAGTCGTCGAGATCCGTCGAGTACATCCAAAATGCCTCCATAGAAGAGCGGATACTGAGGATCACTGGCTACTATGGCTATGAGCCTTGGAGCGCATCTGTTAGAGGGGAGGAGCAGTCCAGCAGTGAGAAGGTGGAAGTGAAGGTGGATGGTCATTCTGGGACAGCCTTATTAGATTGTGCAGACAGGTTGCAGAGGCTCCGCTGCTGTTTGCATTTGACTGCGGTGCATCTACGCGGAGCACTGTGGGGTGTCGCTATGGTCATCTGCATCTGCATGTCTTGGTCAGGAAGCACTCAGTTGGCCAAAATAACTGTTAGACGCTTGAATATCCCATTCACCCTCACTTGGTTCTCCACCTCCTGGAACTGTGCCATCTTCCCCGTCTACTACCTGGGTCACCTGTGCTGGAGCAAGGACAGACAGACCCCCAGACAGCGCTTTAGAGAGTGTTGTCAGTTTCTGGGAGATGACGGCTTGTCTCTGAAGATGCTGCTCTCTCGGGTGGCTCCCTTTGGAGTCTTGTGGACTCTCACCAGCTACTTATACCTGCAAGGCCTTCGCAGAATCCCTGCCACTGATGCCTGTGCGCTGTTCTGCTGCAGTCGTGCCTTTGTCTTCCTCATATCCTGGATCGTCCTGCGGGATCGCTTCATGGGAGTAAGGATTGTGGCGGCCGTTTTAGCCATCGGTGGGATTGTTATGATGACATATGCCGACGGTTTCCACAGTTACTCTGTGATCGGCATCTCACTTGTCGTTGGGTCTGCATCTACAGCAGCTATTTACAAAGTTCTTTTCAAGCTTGTTTTGGGTAGTGCGAAGCTGGGTGAAGCGGCGGTGTATCTTACCATTCTCGGCGGAGCTAATTTGATCTTCATTAGCGCTGTACCTCTCATACTGCTGCTCACAGGGGCAGAGGACTTCATTTCACCTAGAGATTTACCCTGGTCAAGCATATGTGGCATGTCTGCTTTACTACTGGTGTTCAACTTCCTGTTGAATTGTGGTGTTTTGATAACACTTCCTACTCTGATTTCTCTGGGTGTTGTCCTCAGTGTGCCGGTCAATGCTGTTGTCTGAGGTGAAATTGTATCCATGTTCCAGGAGAGTGAGAATGTATGTTGCTGAGAAGCAGTATTCAGAAAGTCATACCTTGTACTTTTGGGGTAAAGGCTTGTGCTGGACAACAGAAATGGATACCATGATGACAATCCCCACGGCAACAACAGCCATCAGAAAGATGACAACCGGCCTGTGCCATGGGTTTTTGACTTTTACTTCTGAAATGAGAGAATAAAGCTGATTGACAATTAATACATATAA
>TCONS_00009522
AAATGGGCTCATCAGAATGTCGACTGAAGCAGCACATCTCTGTGTCAGAGGGAATGAGAAAGCCATCGGACATGAGTCCGCGCCGCCTGTCAGATATCAGTCCTCAGATCAGACAGCTGAAGTCCCTCGTCCTTGATGAAGATCTGAATGAAGAGTTAAAGTCGTCGAGATCCGTCGAGTACATCCAAAATGCCTCCATAGAAGAGCGGATACTGAGGATCACTGGCTACTATGGCTATGAGCCTTGGAGCGCATCTGTTAGAGGGGAGGAGCAGTCCAGCAGTGAGAAGGTGGAAGTGAAGGTGGATGGTCATTCTGGGACAGCCTTATTAGATTGTGCAGACAGGTTGCAGAGGCTCCGCTGCTGTTTGCATTTGACTGCGGTGCATCTACGCGGAGCACTGTGGGGTGTCGCTATGGTCATCTGCATCTGCATGTCTTGGTCAGGAAGCACTCAGTTGGCCAAAATAACTGTTAGACGCTTGAATATCCCATTCACCCTCACTTGGTTCTCCACCTCCTGGAACTGTGCCATCTTCCCCGTCTACTACCTGGGTCACCTGTGCTGGAGCAAGGACAGACAGACCCCCAGACAGCGCTTTAGAGAGTGTTGTCAGTTTCTGGGAGATGACGGCTTGTCTCTGAAGATGCTGCTCTCTCGGGTGGCTCCCTTTGGAGTCTTGTGGACTCTCACCAGCTACTTATACCTGCAAGGCCTTCGCAGAATCCCTGCCACTGATGCCTGTGCGCTGTTCTGCTGCAGTCGTGCCTTTGTCTTCCTCATATCCTGGATCGTCCTGCGGGATCGCTTCATGGGAGTAAGGATTGTGGCGGCCGTTTTAGCCATCGGTGGGATTGTTATGATGACATATGCCGACGGTTTCCACAGTTACTCTGTGATCGGCATCTCACTTGTCGTTGGGTCTGCATCTACAGCAGCTATTTACAAAGTTCTTTTCAAGCTTGTTTTGGGTAGTGCGAAGCTGGGTGAAGCGGCGGTGTATCTTACCATTCTCGGCGGAGCTAATTTGATCTTCATTAGCGCTGTACCTCTCATACTGCTGCTCACAGGGGCAGAGGACTTCATTTCACCTAGAGATTTACCCTGGTCAAGCATATGTGGCATGTCTGCTTTACTACTGGTGTTCAACTTCCTGTTGAATTGTGGTGTTTTGATAACACTTCCTACTCTGATTTCTCTGGGTGTTGTCCTCAGTGTGCCGGTCAATGCTGTCATAGATCGCTACATGTATGACATCCAGCTCAACAGCGTGCGCGTCATTGCGGTATCCATCATCTGTCTGGGCTTTCTTTTGCTCCTGCTGCCCGAGGACTGGGACCAGTGCCTGCCGCAATTGCGATCAATCCTGCACAGCCGAAGACAACCACAAGAGAGCGCCAGAGACAAACACTCAGAGATGCTTCATATACGACCCAGAGAGGCCAAAAACTGCAACTCCAAAACTACCGGTGTCCGCTGA

Function

symbol description
slc35f3a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F3 (solute carrier family 35 member F3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-20 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F3 (solute carrier family 35 member F3).

Ensembl:

ensembl_id ENSDARG00000075909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009518 False 2931 mRNA 0.46 8 30723178 30738034
TCONS_00009519 False 276 mRNA 0.51 2 30723778 30726912
TCONS_00009520 False 418 lncRNA 0.46 2 30726312 30726953
TCONS_00009521 False 1485 nonsense_mediated_decay 0.49 9 30726424 30756585
TCONS_00009522 True 1481 mRNA 0.51 8 30726425 30737196

Neighbor

gene id symbol gene type direction distance location
XLOC_004817 kcnk1a coding upstream 11067 30705769 ~ 30712111 (+)
XLOC_004816 thbs2b coding upstream 41251 30653047 ~ 30681927 (+)
XLOC_004815 NA coding upstream 72152 30636385 ~ 30651026 (+)
XLOC_004813 NA coding upstream 90176 30630019 ~ 30633002 (+)
XLOC_004814 NA coding upstream 90802 30631796 ~ 30632376 (+)
XLOC_004819 aldh18a1 coding downstream 32327 30788912 ~ 30810171 (+)
XLOC_004820 CR751608.1 coding downstream 177266 30933851 ~ 30952692 (+)
XLOC_004821 CR456684.1 coding downstream 439241 31195826 ~ 31195950 (+)
XLOC_004822 CR456684.3 coding downstream 451851 31208436 ~ 31208551 (+)
XLOC_004823 NA coding downstream 519174 31275759 ~ 31276339 (+)
XLOC_004810 CU695011.1 non-coding upstream 213779 30509283 ~ 30509399 (+)
XLOC_004807 NA non-coding upstream 248026 30470981 ~ 30475152 (+)
XLOC_004828 NA non-coding downstream 811603 31568188 ~ 31568526 (+)

Expression


Co-expression Network