zgc:112271 (LOC103361642,LOC104959592,LOC100706616,LOC104935668)


Basic Information

Item Value
gene id zgc:112271
gene name LOC103361642,LOC104959592,LOC100706616,LOC104935668
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4313151 ~ 4315545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU190185
GTGACGCCCACCCCATCACGGACGGTGACTGGAATTAGCGAAAAACAAACACCGTCTAGCGTCTATTACACAACCTTTGACATGGCTATTACAGCTGATCACATCAGGGATAAACTTATAAAGGAGCTCCCGGCAGTGCACGTGGATGTGGAGGATACATCACCCAACAGATGTGCTGCCAGCTACAAAGTCCTGGTGGTGTCAACCCAGTTTGAGGGCAAACCACTGTTACAGAGACACAGGATGGTGAATATGTGCCTAGCCGAGGAGCTGAAAGAGATCCACGCTTTTGAACAGAAGACCCTCACACCAGAACAGTGGGAGAAACAGAAATCACAAtgacccaaacacacacacacacacacacacgttatatCACACTCACATTAGTTTCAAATTTCTACTATAAATTAGGCCTTATGCTCTGATATGTAGAAAAAGAATACAAGTGCTCTCTGTAAATCAGCAGTATTGATATGAAGCAATGGAATGTTCTGGTGGTAATAAAACACTTTGG
>TU190186
TGACCATAACCCCTGTGATACACTCAATTAGATAGCTATACACATTTAGCCCCACTACAACTGATATACTAACGTTACAGTATATGTTTTGTTCACGCAGACATGGCTATTACAGCTGATCACATCAGGGATAAACTTATAAAGGAGCTCCCGGCAGTGCACGTGGATGTGGAGGATACATCACCCAACAGATGTGCTGCCAGCTACAAAGTCCTGGTGGTGTCAACCCAGTTTGAGGGCAAACCACTGTTACAGAGACACAGGATGGTGAATATGTGCCTAGCCGAGGAGCTGAAAGAGATCCACGCTTTTGAACAGAAGACCCTCACACCAGAACAGTGGGAGAAACAGAAATCACAAtgacccaaacacacacacacacacacacacgttatatCACACTCACATTAGTTTCAAATTTCTACTATAAATTAGGCCTTATGCTCTGATATGTAGAAAAAGAATACAAGTGCTCTCTGTAAATCAGCAGTATTGATATGAAGCAATGGAATGTTCTGGTGGTAATAAAACACTTTGG
>XM_039823283.1
TTCGGTCAGTGACGCCCACCCCATCACGGACGGTGACTGGAATTAGCGAAAAACAAACACCGTCTAGCGTCTATTACACAACCTTTGACATGGCTATTACAGCTGATCACATCAGGGATAAACTTATAAAGGAGCTCCCGGCAGTGCACGTGGATGTGGAGGATACATCACCCAACAGATGTGCTGCCAGCTACAAAGTCCTGGTGGTGTCAACCCAGTTTGAGGGCAAACCACTGTTACAGAGACACAGGATGGTGAATATGTGCCTAGCCGAGGAGCTGAAAGAGATCCACGCTTTTGAACAGAAGACCCTCACACCAGAACAGTGGGAGAAACAGAAATCACAAtgacccaaacacacacacacacacacacacgttatatCACACTCACATTAGTTTCAAATTTCTACTATAAATTAGGCCTTATGCTCTGATATGTAGAAAAAGAATACAAGTGCTCTCTGTAAATCAGCAGTATTGATATGAAGCAATGGAATGTTCTGGTGGTAATAAAACACTTTGGTGATGTA
>XM_039823284.1
TTCCGGTTTTAGCATGTCTATGACCATAACCCCTGTGATACACTCAATTAGATAGCTATACACATTTAGCCCCACTACAACTGATATACTAACGTTACAGTATATGTTTTGTTCACGCAGACATGGCTATTACAGCTGATCACATCAGGGATAAACTTATAAAGGAGCTCCCGGCAGTGCACGTGGATGTGGAGGATACATCACCCAACAGATGTGCTGCCAGCTACAAAGTCCTGGTGGTGTCAACCCAGTTTGAGGGCAAACCACTGTTACAGAGACACAGGATGGTGAATATGTGCCTAGCCGAGGAGCTGAAAGAGATCCACGCTTTTGAACAGAAGACCCTCACACCAGAACAGTGGGAGAAACAGAAATCACAAtgacccaaacacacacacacacacacacacgttatatCACACTCACATTAGTTTCAAATTTCTACTATAAATTAGGCCTTATGCTCTGATATGTAGAAAAAGAATACAAGTGCTCTCTGTAAATCAGCAGTATTGATATGAAGCAATGGAATGTTCTGGTGGTAATAAAACACTTTGGTGATGTA

Function

NR:

description
BolA-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190185 False 517 TUCP 0.44 4 4313159 4315538
TU190186 False 538 TUCP 0.42 3 4313366 4315538
XM_039823283.1 False 532 mRNA 0.44 4 4313151 4315545
XM_039823284.1 True 565 mRNA 0.42 3 4313346 4315545

Neighbor

gene id symbol gene type direction distance location
LOC120572661 NA coding upstream 13561 4286328 ~ 4299590 (+)
si:ch211-212k18.7 NA coding upstream 30480 4271925 ~ 4282671 (+)
LOC120572240 NA coding upstream 60309 4236291 ~ 4252842 (+)
rwdd rwdd4 coding upstream 102796 4205927 ~ 4210355 (+)
LOC120573426 NA coding upstream 154997 4149918 ~ 4158154 (+)
rtn3 LOC103359706,LOC108242286 coding downstream 131864 4447409 ~ 4479287 (+)
si:dkey-28a3.2 NA coding downstream 181903 4497448 ~ 4511964 (+)
eml3 eml3,LOC100700327,LOC101475149 coding downstream 213153 4528698 ~ 4594420 (+)
mta2 mta2 coding downstream 281487 4597032 ~ 4641652 (+)
cth1 LOC104936466,LOC104960793 coding downstream 330978 4646523 ~ 4649189 (+)
G140925 NA non-coding upstream 638683 3674091 ~ 3674468 (+)
G140896 NA non-coding upstream 733804 3523111 ~ 3579347 (+)
G140895 NA non-coding upstream 798746 3514176 ~ 3514405 (+)
G140884 NA non-coding upstream 850968 3461858 ~ 3462183 (+)
G140832 H2AFV non-coding upstream 855765 3455522 ~ 3457386 (+)
G141044 NA non-coding downstream 15311 4330856 ~ 4331987 (+)
G141045 pygm,pygmb,LOC103391662,LOC106531364 non-coding downstream 16757 4332302 ~ 4342306 (+)
G141054 LOC103391650,LOC104940820 non-coding downstream 43376 4358921 ~ 4359458 (+)
G141052 NA non-coding downstream 51016 4366561 ~ 4368337 (+)
G141079 NA non-coding downstream 172195 4487740 ~ 4487994 (+)
mllt3 mllt3 other upstream 879348 3256513 ~ 3433803 (+)
ablim2 ablim2 other upstream 1358461 2828052 ~ 2954690 (+)
G140613 NA other upstream 2253784 2055439 ~ 2059367 (+)
G140594 NA other upstream 2280926 2022592 ~ 2032225 (+)
G140582 NA other upstream 2282524 1929623 ~ 2030627 (+)
G141060 men1 other downstream 125093 4440638 ~ 4444947 (+)
G141063 NA other downstream 168147 4483692 ~ 4487607 (+)
trnaw-cca_15 NA other downstream 1921458 6237003 ~ 6237074 (+)
drap1 drap1 other downstream 2256176 6571721 ~ 6578757 (+)
LOC120573071 map3k11 other downstream 2273406 6588951 ~ 6640245 (+)

Expression


Co-expression Network