LOC120572256


Basic Information

Item Value
gene id LOC120572256
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6353464 ~ 6371100 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU191047
TTTAGTTCAGAAGCCCGTGACTGCAGGTAAGGACCACTTGTGGTATACTGATCTCTCTCCAGCCCCGCATCCAGAAGGAATACCCTACCCAAGGCATCATGGCAACCACCAGTCGCATCCTGCTGCTCAGCATCCTGGGACTTGCTTTGCTCTCCTCAGTGATCTGCAACAatACGAGCGGTCCCGACGACTGCTGCTTCGTCATCTACCCGAGGAGAGTCAACAAAAACCTCATCAGCTCCTATTACATGACCGATCACCGCTGCCCCAAGACCGGGGCCATTCTGGTTACTAAAAAGTCTCGTCACATCTGCGTGGATCCCAATCTCTCCTGGGTCGTGGGCATTATGAAAAGTTTGGACGAAAGCAACTTTTAAAGCAGCTGCCCGCTCCGCTCCTGCTTTTTTAAAGTCGCCGCggctttttgttgctttatcaAATCGCAGACTGTGAAATGTGAAATTGATGTGAACATCTGTTGTGAGTAATTCAGGATTTTGCCTCCAAATGGAGTCATTTCCAGCCTCCATTGACCTACTTATCCTGTGTTTCTGTAATTTCTTTTAGATGCTTTTTAAAACTCACAATATCAAACAGTATGAACTTCATACAAATAAAGT
>TU191048
TTTAGTTCAGAAGCCCGTGACTGCAGGTAAGGACCACTTGTGGTATACTGATCTCTCTCCAGCCCCGCATCCAGAAGGAATACCCTACCCAAGGCATCATGGCAACCACCAGTCGCATCCTGCTGCTCAGCATCCTGGGACTTGCTTTGCTCTCCTCAGTGATCTGCAACAatACGAGCGGTCCCGACGACTGCTGCTTCGTCATCTACCCGAGGAGAGTCAACAAAAACCTCATCAGCTCCTATTACATGACCGATCACCGCTGCCCCAAGACCGGGGCCATTCTGGTTACTAAAAAGTCTCGTCACATCTGCGTGGATCCCAATCTCTCCTGGGTCGTGGGCATTATGAAAAGTTTGGACGAAAGCAACTTTTAAAGCAGCTGCCCGCTCCGCTCCTGCTTTTTTAAAGTCGCCGCggctttttgttgctttatcaAATCGCAGACTGTGAAATGTGAAATTGATGTGAACATCTGTTGTGAGTAATTCAGGATTTTGCCTCCAAATGGAGTCATTTCCAGCCTCCATTGACCTACTTATCCTGTGTTTCTGTAATTTCTTTTAGATGCTTTTTAAAACTCACAATATCAAACAGTATGAACTTCATACAAATAAAGTGTGTACGCTTTGCaaaaaaaaaaaaa
>XM_039821491.1
caCCTCATTTAGTTCAGAAGCCCGTGACTGCAGGTAAGGACCACTTGTGGTATACTGATCTCTCTCCAGCCCCGCATCCAGAAGGAATACCCTACCCAAGGCATCATGGCAACCACCAGTCGCATCCTGCTGCTCAGCATCCTGGGACTTGCTTTGCTCTCCTCAGTGATCTGCAACAatACGAGCGGTCCCGACGACTGCTGCTTCGTCATCTACCCGAGGAGAGTCAACAAAAACCTCATCAGCTCCTATTACATGACCGATCACCGCTGCCCCAAGACCGGGGCCATTCTGGTTACTAAAAAGTCTCGTCACATCTGCGTGGATCCCAATCTCTCCTGGGTCGTGGGCATTATGAAAAGTTTGGACGAAAGCAACTTTTAAAGCAGCTGCCCGCTCCGCTCCTGCTTTTTTAAAGTCGCCGCggctttttgttgctttatcaAATCGCAGACTGTGAAATGTGAAATTGATGTGAACATCTGTTGTGAGTAATTCAGGATTTTGCCTCCAAATGGAGTCATTTCCAGCCTCCATTGACCTACTTATCCTGTGTTTCTGTAATTTCTTTTAGATGCTTTTTAAAACTCACAATATCAAACAGTATGAACTTCATACAAATAAAGTGTGTACGCTTTG

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04145 Phagosome
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05150 Staphylococcus aureus infection
ko05140 Leishmaniasis
ko05310 Asthma
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU191047 False 620 TUCP 0.47 3 6369698 6371093
TU191048 True 646 TUCP 0.46 4 6353464 6371093
XM_039821491.1 False 639 mRNA 0.47 3 6369686 6371100

Neighbor

gene id symbol gene type direction distance location
eif4a1a LOC107098142,LOC103365478,LOC100693841,LOC103148870,LOC102238331,LOC101477102 coding downstream 12727 6331688 ~ 6340737 (-)
LOC120573735 NA coding downstream 16705 6336621 ~ 6336759 (-)
LOC120573734 NA coding downstream 17832 6335494 ~ 6335632 (-)
tm4sf21b NA coding downstream 109795 6237573 ~ 6243669 (-)
trappc14 LOC104941436 coding downstream 167840 6158858 ~ 6185624 (-)
kiaa0232 kiaa0232 coding upstream 49433 6420533 ~ 6432598 (-)
LOC120572244 NA coding upstream 80562 6451662 ~ 6452673 (-)
LOC120573666 NA coding upstream 84907 6456007 ~ 6490226 (-)
LOC120572494 LOC102208922,LOC107376753,LOC104965782,LOC101158483,LOC106907457,LOC103033313 coding upstream 143780 6514880 ~ 6546583 (-)
c14h11orf68 clg18h11orf68,LOC104919665,LOC103366235,LOC104965781,LOC106907460,LOC102230372 coding upstream 195470 6566570 ~ 6569196 (-)
G141613 NA non-coding downstream 86881 6266151 ~ 6266583 (-)
G141612 NA non-coding downstream 87439 6265440 ~ 6266025 (-)
G141601 NA non-coding downstream 196051 6156052 ~ 6157413 (-)
G141470 NA non-coding downstream 361237 5989895 ~ 5992227 (-)
G141468 NA non-coding downstream 382077 5970935 ~ 5971387 (-)
G141667 NA non-coding upstream 84839 6455939 ~ 6511995 (-)
G141683 NA non-coding upstream 187198 6558298 ~ 6645212 (-)
G141688 NA non-coding upstream 206077 6577177 ~ 6578755 (-)
G141741 NA non-coding upstream 1024059 7395159 ~ 7462473 (-)
G141773 NA non-coding upstream 1147165 7518265 ~ 7518467 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other downstream 37647 6308898 ~ 6315817 (-)
LOC120572220 NA other downstream 122167 6221971 ~ 6231297 (-)
gal3st4 gal3st4,LOC104939968 other downstream 133204 6177921 ~ 6220260 (-)
G141439 NA other downstream 510318 5743559 ~ 5843146 (-)
G141400 NA other downstream 753002 5596958 ~ 5600462 (-)
tbc1d14 tbc1d14 other upstream 4872 6375972 ~ 6416457 (-)
LOC120572295 rasgrp2,LOC104942268 other upstream 1277872 7648972 ~ 7703618 (-)
fcer1g NA other upstream 1410811 7781911 ~ 7787667 (-)
LOC120573451 NA other upstream 1469821 7840921 ~ 7937490 (-)
G141913 NA other upstream 1564130 7935230 ~ 7987441 (-)

Expression


Co-expression Network