LOC120573538


Basic Information

Item Value
gene id LOC120573538
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7716604 ~ 7721656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU191293
aggaAGTGACTCCTCTCTCGAGCACCAGAGTGTTTGTGGCTGCCTTACAACAGGGAGCGTGGAATCCAAAAGTATGAGATTCTTAGTATTGTTACCGTGCTTCCTGGCAGGCTGCCTGGCTCAGAAGCCTCACCCATGCTcaagtcCTCCTCTCCTGAGCGGAGCCCTCGCTATAACCACACAGAATGAAAAGCTGTGGAGTTATGCCAAATACCTGTACGATGCGATTGGACAACGGTTCCGGATCATGGAGCTAGGCACTTATGAGAATAAGTCATTCAACTACGACGCTCTTCTGCTCTACAAAGAGGTGACCAAAGCAATGACATAATGAACAtcccaaatatttattttggagTGCAGTCGCTCCTGATCGGAGGTCA
>TU191297
gcTCGTCTGGACCTGGACAAGGACTCCTGGTCAACAGTTGGGTTGGAGATCTGCCAGACAAATCAGGAAAGTACATGACCACAGTCACTGAATTCGGTTGCATCCCTGTGAGCAGTGATTACCAGACGAAGGAGTATGGATGGTTGGTGACAAGCTTCTTCAACAACGTCATTGGGATAGAGGACCCCGGGAAGCTCACCCCTCCAGACTTCTGCCAGGATGCAGAGCTGAATGCTGACAGCGAAGAGGAGCCTGTAGACTTCTTCAGCGTGTTCCTCAAAAAGCATTGAGGCCTTCAGCATAGCGTTCCTTTAACCAATGATTTGCCATTAAACAAGTGGAGCTACTGAATCACAGCTTTGTTAGGTGGTATACATCACACCTACTCCTGCTAATAACATCTTTTTCCAAGCATCTTGAGTTGAGCATCTCAGACCAAATTTTGCAGAATTTCccatatttcttttgttttttgggttGTTTTTTGCATACACTATATCTGTCTTTACCCaacttaaagctgcatttatGAATGTTTTCATAGTGACAGTGGGTCCAAAAATGCCCTCTTTCTATCAATATGCTGATGTGTGACCATGTGTAATTTTTATCAATAAAGAACAATA
>XM_039823327.1
acagtatataaggaAGTGACTCCTCTCTCGAGCACCAGAGTGTTTGTGGCTGCCTTACAACAGGGAGCGTGGAATCCAAAAGTATGAGATTCTTAGTATTGTTACCGTGCTTCCTGGCAGGCTGCCTGGCTCAGAAGCCTCACCCATGCTcaagtcCTCCTCTCCTGAGCGGAGCCCTCGCTATAACCACACAGAATGAAAAGCTGTGGAGTTATGCCAAATACCTGTACGATGCGATTGGACAACGGTTCCGGATCATGGAGCTAGGCACTTATGAGAATAAGTCATTCAACTACGACGCTCTTCTGCTCTACAAAGAGGTGACCAAAGCAATGACATAcaaattgttttttttttttttttgggggggaggcTCGTCTGGACCTGGACAAGGACTCCTGGTCAACAGTTGGGTTGGAGATCTGCCAGACAAATCAGGAAAGTACATGACCACAGTCACTGAATTCGGTTGCATCCCTGTGAGCAGTGATTACCAGACGAAGGAGTATGGATGGTTGGTGACAAGCTTCTTCAACAACGTCATTGGGATAGAGGACCCCGGGAAGCTCACCCCTCCAGACTTCTGCCAGGATGCAGAGCTGAATGCTGACAGCGAAGAGGAGCCTGTAGACTTCTTCAGCGTGTTCCTCAAAAAGCATTGAGGCCTTCAGCATAGCGTTCCTTTAACCAATGATTTGCCATTAAACAAGTGGAGCTACTGAATCACAGCTTTGTTAGGTGGTATACATCACACCTACTCCTGCTAATAACATCTTTTTCCAAGCATCTTGAGTTGAGCATCTCAGACCAAATTTTGCAGAATTTCccatatttcttttgttttttgggttGTTTTTTGCATACACTATATCTGTCTTTACCCaacttaaagctgcatttatGAATGTTTTCATAGTGACAGTGGGTCCAAAAATGCCCTCTTTCTATCAATATGCTGATGTGTGACCATGTGTAATTTTTATCAATAAAGAACAATAAACAAATGCATACATTTCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU191293 False 383 TUCP 0.49 3 7716614 7717329
TU191297 False 626 TUCP 0.43 3 7718020 7721637
XM_039823327.1 True 1017 mRNA 0.44 6 7716604 7721656

Neighbor

gene id symbol gene type direction distance location
alpk1 LOC102787108 coding upstream 1197 7704847 ~ 7715407 (+)
rela rela coding upstream 1150037 6549081 ~ 6566567 (+)
LOC120572493 LOC103366238 coding upstream 1180728 6492379 ~ 6535876 (+)
mpdu1b mpdu1 coding upstream 1428373 6280432 ~ 6288231 (+)
LOC120573493 NA coding upstream 1439263 6267364 ~ 6277341 (+)
LOC120572296 NA coding downstream 553 7722209 ~ 7724614 (+)
fxr2 fxr2 coding downstream 248361 7970017 ~ 7985215 (+)
LOC120573420 LOC104946620,LOC103361161 coding downstream 284117 8005773 ~ 8009869 (+)
LOC120572361 NA coding downstream 297580 8019236 ~ 8020881 (+)
LOC120573542 NA coding downstream 584329 8305985 ~ 8314768 (+)
G141821 NA non-coding upstream 331 7715904 ~ 7716273 (+)
G141780 NA non-coding upstream 157417 7558706 ~ 7559187 (+)
G141772 NA non-coding upstream 197901 7518333 ~ 7518703 (+)
LOC120573369 NA non-coding upstream 219272 7478498 ~ 7497332 (+)
LOC120572353 NA non-coding upstream 885228 6828827 ~ 6831376 (+)
G141830 NA non-coding downstream 3057 7724713 ~ 7724951 (+)
G141835 NA non-coding downstream 28627 7750283 ~ 7783035 (+)
G141857 NA non-coding downstream 119274 7840930 ~ 7937490 (+)
G141866 NA non-coding downstream 152750 7874406 ~ 7875940 (+)
G141869 dock11,LOC104947893 non-coding downstream 163166 7884822 ~ 7885647 (+)
LOC120573071 map3k11 other upstream 1076359 6588951 ~ 6640245 (+)
drap1 drap1 other upstream 1137847 6571721 ~ 6578757 (+)
trnaw-cca_15 NA other upstream 1479530 6237003 ~ 6237074 (+)
G141063 NA other upstream 3228997 4483692 ~ 4487607 (+)
G141060 men1 other upstream 3271657 4440638 ~ 4444947 (+)
LOC120572330 LOC107104736,LOC106920517,LOC103140598,LOC106947113 other downstream 268542 7990198 ~ 7997708 (+)
LOC120572385 NA other downstream 335999 8057655 ~ 8060478 (+)
LOC120573547 NA other downstream 669159 8390815 ~ 8400539 (+)
LOC120573548 NA other downstream 691023 8412679 ~ 8413334 (+)
LOC120572397 NA other downstream 731277 8452933 ~ 8496546 (+)

Expression


Co-expression Network