LOC120572406


Basic Information

Item Value
gene id LOC120572406
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8452892 ~ 8496522 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU191630
TGCagtgtctctcttctctgtctgctAGTTGTTGTTGCTCCAGTTCTCCCTTCATTTCTGTTGGTTTAGTTTGGTTATGTtgtttcagtttattgttaCGAGAAGTGTTTCGAGAAGTTAGCTGACAGGGCAAGCACTGACATATGacatgttgtgtgtttgtgtggcgcTGATTAACCCTGGTACATTCATTCAGGACATGTCTCAGATGATTAATGTCTCAGGCAGTCGCGGAAACGGCACGCTGACGGCTGCAAACCAGACGCCTTCTACACAGAGAACACTATTGAAGACAAAGACGCTGACGGACTGTTCTTGTTCTCCTACCATACAAACTTTTGTAAATACACCTTTTGAAACCTAAAGTACAACAACGAGGAAGAGCGGGGGGCTGGCCCAGCGAGGACGTCGACTGAGCACGCAGGGCAGTGTACCCTGGAGAGAAGGCGTGGCCACCGAAGCAAGCAGACCTCTTCAGACGCCAACGCATTTTGTGTctggGAAGCAAATATTTCGCTGCACAAAGCATGCTGGGATACCTGGAGACACGGACCAAGCTGGCATTGCAACAGGAAAAAGAAGACCCAGAATTACTGCTTGGAGGAAGGTGGCAGCTATTGTTGGGGGAAACTTATGGAAATACAGTCCAGAGTCCGATGAATCCACTCTCTTGATTTTAAGAAAGACAGTAGAGATGTTGGAGCTCATCTCAAATCTATTTTGAAATCCATCACAGAAGGAAGCATTGCTATCATTTGGGTTCATGGAGGAGACACAGCTGGGCTTCTTTCTGTTGATCACTCTGAACCATTCTGTTGTAGTTATAACTCTGGAAATGTTGGAGCACATCAGAGTGACGCCTCCACCAGACTGGACCTCCACAGTGTGAGACTCAGAAGCTGAGACAGAGATCCAgcctgaaacaaacagcagagacgGAAAGAGATTCATCCCTGAGTGTATAATGCAGCACTTACTGTATTAATGCAACAACAATAATTCAGTTCTTATTTAAAAGTTGAAAGCTGGTGGGTGATTTGTTAGATGATTTGGTGCTGAGAATAACCAAGTATCAGTACTTACTGAGGCTGCAGAGAGGTAAAGGTGTTATCAAGGTGAAGTTCCTCATTGTGTGTTCGTTTCACTGTAAAGAGAATTTCTACCGCTGAGCTCTTATAAAGGAGTTTAGAGAGGCGGGGTGTCTTTTGCTTTTCATCTTGCCGCTCACACCAACCTGCCAATGCAATGCCTTTGCACCAATTTAGGCTCAGAACGTTTGGTTCTCAGAGACTCTTATGATAACACATTATATCATTGTTATTTGGTGCATGCTGCAATCTCTGGATAGTGTTTGGGTTCATTCTAAAGGTTTCCATGGGTCAAGTTATGATCTTCTACCAGAGACCTGCTCCTATATTATAATGTTGGTAAAGGGTTCATTCACTCTGCATCTTTGTGTTTAAATGGAGTTTTCCTGTTGATGCACAAATCTATCCAACATGCCTTTTTCTTAGATTTCTGTACCATTCTCCACATACGTTGAAACCCTTTCAGTTAACATGATAGCAATTgtaaacttgaaaataaacagtTTTATGCTTGGCTGAAATGGAAAAAGATGTGTatcaataataacaaaatgCCACTTAGTCCACTGGAAACCAACTTGGGTAATGAATCATCACGTGCATCAAGTATGTGACTTAAACATCACTCGTTAGAAATGTCGGGATTTGATTGGCTCTCTTTTAATCTGCAGTGATTAATGAATATATCCCAGTTCACTTATATTAACATTACTGGATGGGAATGTgcacacattttcagaaaattCAGTTAAAATTTGTGCTAAtttaaa
>TU191634
TGCagtgtctctcttctctgtctgctAGTTGTTGTTGCTCCAGTTCTCCCTTCATTTCTGTTGGTTTAGTTTGGTTATGTtgtttcagtttattgttaCGAGAAGTGTTTCGAGAAGTTAGCTGACAGGGCAAGCACTGACATATGacatgttgtgtgtttgtgtggcgcTGATTAACCCTGGTACATTCATTCAGGACATGTCTCAGATGATTAATGTCTCAGGCAGTCGCGGAAACGGCACGCTGACGGCTGCAAACCAGACGCCTTCTACACAGAGAACACTATTGAAGACAAAGACGCTGACGGACTGTTCTTGTTCTCCTACCATACAAACTTTTGTAAATACACCTTTTGAAACCTAAAGTACAACAACGAGGAAGAGCGGGGGGCTGGCCCAGCGAGGACGTCGACTGAGCACGCAGGGCAGTGTACCCTGGAGAGAAGGCGTGGCCACCGAAGCAAGCAGACCTCTTCAGACGCCAACGCATTTTGTGTctggGAAGCAAATATTTCGCTGCACAAAGCATGCTGGGATACCTGGAGACACGGACCAAGCTGGCATTGCAACAGGAAAAAGAAGACCCAGAATTACTGCTTGGAGGAAGGTGGCAGCTATTGTTGGGGGAAACTTATGGCCTGGCCTCGTCACTCTGATATCAGGTGTGCTCAGACCACACTGTGCTGTCTCTTCCTGTGAAGAGATGCATACCCCCCCGCCCCCGACAAACCATTAGACTCTCCATATGAGCCTCCTGTTCCTTATTGTGTTTGGAAGGAACCTCAGAGCTGCAGAGTTCAGATCATCAGAGCCCACATTCTGTAGATCAATACAGTATTTAGTATCACATATCTCACACACTGGAACTACTTTTTTCAGAAGGCAGTGGAGAATCTGTACTGGCCCTGGTTAATGATTTAAACCTTAAATATACCAACATATATTATTAACTACTGTAATACTTCACCTTGTTTCTTTCAGGATGCAGTTCTTCTTTAGCAACTATGTGACAAAACATACGCCTGATTAGTTAACTGACCAAATTCTTTGCAGTGGATTTGTCTGTTAAAACGTAATACAACTGAATGTACAACAAGTGATACGTCTGTACCTTTCTGAAGTGACAGATGACAGCTATCATGAAGACAAACGTCAGAACACCAGGATCACATTTAGTCTGTTTTTAAAAGAGATGGCTGAGATTGAAATGACTGGCTCTGTGGACACTTGCACcggtgctttaaaaaaaacaaaatgacgaAACTTGAGACatattgttttactgttttttctttGTGCTGTTTTCATACTACTAATAAATGTGAAATATTCTATAAGTATGATGGAAAGACATCTCTGAGGCTTAACTACGATCTTACCTTGAACTTTTAGATATGTTGCACTGGCGATCGCTCTCTTGATTTTATCTGTCCTGGTGACATGACGTGAGTGATGGCAAGGCCAGTCCACAATCAGTCCACCTCTTGGGTCCTCGACTGAAATATGTCAACAACTATTATGACATTTTGAACAGATagtcatggtccccagaggatgtaGCCTAGTGACTTTAAAGATCCCCAG
>TU191643
TGCagtgtctctcttctctgtctgctAGTTGTTGTTGCTCCAGTTCTCCCTTCATTTCTGTTGGTTTAGTTTGGTTATGTtgtttcagtttattgttaCGAGAAGTGTTTCGAGAAGTTAGCTGACAGGGCAAGCACTGACATATGacatgttgtgtgtttgtgtggcgcTGATTAACCCTGGTACATTCATTCAGGACATGTCTCAGATGATTAATGTCTCAGGCAGTCGCGGAAACGGCACGCTGACGGCTGCAAACCAGACGCCTTCTACACAGAGAACACTATTGAAGACAAAGACGCTGACGGACTGTTCTTGTTCTCCTACCATACAAACTTTTGTAAATACACCTTTTGAAACCTAAAGTACAACAACGAGGAAGAGCGGGGGGCTGGCCCAGCGAGGACGTCGACTGAGCACGCAGGGCAGTGTACCCTGGAGAGAAGGCGTGGCCACCGAAGCAAGCAGACCTCTTCAGACGCCAACGCATTTTGTGTctggACTTCCTGTCGTCGTCATGAGATTCATCGCTgccttttaacaaaataaaagatacatttacttTTGAT
>XR_005641438.1
ctctgtctgctAGTTGTTGTTGCTCCAGTTCTCCCTTCATTTCTGTTGGTTTAGTTTGGTTATGTtgtttcagtttattgttaCGAGAAGTGTTTCGAGAAGTTAGCTGACAGGGCAAGCACTGACATATGacatgttgtgtgtttgtgtggcgcTGATTAACCCTGGTACATTCATTCAGGACATGTCTCAGATGATTAATGTCTCAGGCAGTCGCGGAAACGGCACGCTGACGGCTGCAAACCAGACGCCTTCTACACAGAGAACACTATTGAAGACAAAGACGCTGACGGACTGTTCTTGTTCTCCTACCATACAAACTTTTGTAAATACACCTTTTGAAACCTAAAGTACAACAACGAGGAAGAGCGGGGGGCTGGCCCAGCGAGGACGTCGACTGAGCACGCAGGGCAGTGTACCCTGGAGAGAAGGCGTGGCCACCGAAGCAAGCAGACCTCTTCAGACGCCAACGCATTTTGTGTctggGAAGCAAATATTTCGCTGCACAAAGCATGCTGGGATACCTGGAGACACGGACCAAGCTGGCATTGCAACAGGAAAAAGAAGACCCAGAATTACTGCTTGGAGGAAGGTGGCAGCTATTGTTGGGGGAAACTTATGGCCTGGCCTCGTCACTCTGATATCAGGTGTGCTCAGACCACACTGTGCTGTCTCTTCCTGTGAAGAGATGCATACCCCCCCGCCCCCGACAAACCATTAGACTCTCCATATGAGCCTCCTGTTCCTTATTGTGTTTGGAAGGAACCTCAGAGCTGCAGAGTTCAGATCATCAGAGCCCACATTCTGTAGATCAATACAGTATTTAGTATCACATATCTCACACACTGGAACTACTTTTTTCAGAAGGCAGTGGAGAATCTGTACTGGCCCTGGTTAATGATTTAAACCTTAAATATACCAACATATATTATTAACTACTGTAATACTTCACCTTGTTTCTTTCAGGATGCAGTTCTTCTTTAGCAACTATGTGACAAAACATACGCCTGATTAGTTAACTGACCAAATTCTTTGCAGTGGATTTGTCTGTTAAAACGTAATACAACTGAATGTACAACAAGTGATACGTCTGTACCTTTCTGAAGTGACAGATGACAGCTATCATGAAGACAAACGTCAGAACACCAGGATCACATTTAGTCTGTTTTTAAAAGAGATGGCTGAGATTGAAATGACTGGCTCTGTGGACACTTGCACcggtgctttaaaaaaaacaaaatgacgaAACTTGAGACatattgttttactgttttttctttGTGCTGTTTTCATACTACTAATAAATGTGAAATATTCTATAAGTATGA
>XR_005641439.1
ctctgtctgctAGTTGTTGTTGCTCCAGTTCTCCCTTCATTTCTGTTGGTTTAGTTTGGTTATGTtgtttcagtttattgttaCGAGAAGTGTTTCGAGAAGTTAGCTGACAGGGCAAGCACTGACATATGacatgttgtgtgtttgtgtggcgcTGATTAACCCTGGTACATTCATTCAGGACATGTCTCAGATGATTAATGTCTCAGGCAGTCGCGGAAACGGCACGCTGACGGCTGCAAACCAGACGCCTTCTACACAGAGAACACTATTGAAGACAAAGACGCTGACGGACTGTTCTTGTTCTCCTACCATACAAACTTTTGTAAATACACCTTTTGAAACCTAAAGTACAACAACGAGGAAGAGCGGGGGGCTGGCCCAGCGAGGACGTCGACTGAGCACGCAGGGCAGTGTACCCTGGAGAGAAGGCGTGGCCACCGAAGCAAGCAGACCTCTTCAGACGCCAACGCATTTTGTGTctggGAAGCAAATATTTCGCTGCACAAAGCATGCTGGGATACCTGGAGACACGGACCAAGCTGGCATTGCAACAGGAAAAAGAAGACCCAGAATTACTGCTTGGAGGAAGGTGGCAGCTATTGTTGGGGGAAACTTATGGCCTGGCCTCGTCACTCTGATATCAGGTGTGCTCAGACCACACTGTGCTGTCTCTTCCTGTGAAGAGATGCATACCCCCCCGCCCCCGACAAACCATTAGACTCTCCATATGAGATGCAGTTCTTCTTTAGCAACTATGTGACAAAACATACGCCTGATTAGTTAACTGACCAAATTCTTTGCAGTGGATTTGTCTGTTAAAACGTAATACAACTGAATGTACAACAAGTGATACGTCTGTACCTTTCTGAAGTGACAGATGACAGCTATCATGAAGACAAACGTCAGAACACCAGGATCACATTTAGTCTGTTTTTAAAAGAGATGGCTGAGATTGAAATGACTGGCTCTGTGGACACTTGCACcggtgctttaaaaaaaacaaaatgacgaAACTTGAGACatattgttttactgttttttctttGTGCTGTTTTCATACTACTAATAAATGTGAAATATTCTATAAGTATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191630 True 1858 lncRNA 0.42 3 8452892 8496522
TU191634 False 1584 lncRNA 0.44 4 8475831 8496522
TU191643 False 569 lncRNA 0.47 2 8489894 8496522
XR_005641438.1 False 1328 lncRNA 0.44 4 8476072 8496507
XR_005641439.1 False 1096 lncRNA 0.45 4 8476072 8496507

Neighbor

gene id symbol gene type direction distance location
LOC120572375 NA coding downstream 112174 8337627 ~ 8340718 (-)
LOC120572386 NA coding downstream 120570 8330042 ~ 8332322 (-)
LOC120572383 NA coding downstream 186282 8263065 ~ 8266610 (-)
LOC120572396 NA coding downstream 234509 8216609 ~ 8218383 (-)
LOC120573540 NA coding downstream 269798 8181627 ~ 8183094 (-)
LOC120572372 NA coding upstream 8529 8505051 ~ 8507235 (-)
LOC120573552 NA coding upstream 235454 8731976 ~ 8743541 (-)
LOC120573555 NA coding upstream 285691 8782213 ~ 8784307 (-)
LOC120573556 NA coding upstream 291269 8787791 ~ 8798859 (-)
LOC120573557 NA coding upstream 312109 8808631 ~ 8809792 (-)
G142072 NA non-coding downstream 104960 8347541 ~ 8347932 (-)
LOC120572402 NA non-coding downstream 154835 8296962 ~ 8298057 (-)
LOC120572405 NA non-coding downstream 194072 8257532 ~ 8258820 (-)
G141996 NA non-coding downstream 202330 8228180 ~ 8250562 (-)
G141995 NA non-coding downstream 224778 8227721 ~ 8228114 (-)
LOC120572413 NA non-coding upstream 67318 8563840 ~ 8566357 (-)
LOC120572407 NA non-coding upstream 100156 8596678 ~ 8601588 (-)
G142128 NA non-coding upstream 312148 8808670 ~ 8816061 (-)
G142131 NA non-coding upstream 323836 8820358 ~ 8820678 (-)
G142143 NA non-coding upstream 374565 8871087 ~ 8899675 (-)
LOC120573543 NA other downstream 117518 8332365 ~ 8335374 (-)
LOC120572400 NA other downstream 340208 8107647 ~ 8112684 (-)
G141913 NA other downstream 465451 7935230 ~ 7987441 (-)
LOC120573451 NA other downstream 515402 7840921 ~ 7937490 (-)
fcer1g NA other downstream 665225 7781911 ~ 7787667 (-)
LOC120572370 NA other upstream 13871 8510393 ~ 8523919 (-)
LOC120572366 NA other upstream 20501 8517023 ~ 8543732 (-)
LOC120572236 LOC102083041 other upstream 536425 9032947 ~ 9105231 (-)
G142173 NA other upstream 602219 9098741 ~ 9100414 (-)
chrnb1l LOC101463714,LOC102292928,LOC102798105 other upstream 634121 9130643 ~ 9153933 (-)

Expression


Co-expression Network