LOC120572236 (LOC102083041)


Basic Information

Item Value
gene id LOC120572236
gene name LOC102083041
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 9032947 ~ 9105231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU191762
aagagcacacacacacacacacacacacacacacatgcaaaagtcAAAgtaagaagacagaaagaaaaagtccCTCAGAAAGATAACAAAATTGTGCTTGTCTTTTCTTTGGGGGGGATCAAACAAGCACTGACAGCCATGTCACGACAGGTGGTCCAGGTCCAGCCGGAGAGCAGGGTTCAGGAGGCAGGTCAATGGAGTACTGGCCTGTGTGAGTGCCATAAAGACGTGGGTGACTGCTGCTTTGCCGTGTGCTGCCTCCCAGTGTTCACCTGTAAGGTGACCAGTGCAGTGGGTGCCTGTCCCTGTCTGCCTCTGCTGGACTGTATCGGCTGTGTCCCACCGGCATCTCTCGCCATGAGGGCGTCTGTCAGGCAACGATACGGCATACGGGGGAGTATGTGGAGCGACTGCCTGTACGGATGCTGCTGCTATCCGCTATCTTGGCTCCAGATCtccagagagctgaagagaagAGCAGCATCCCACgcctcctccttttcctcctcttcctcctcagccAGATACACTGCTCTGACCACCCTGCAGGGGGCGCACCTGGTCTAGACACATGCTGcgctgcttttattttttattttttttaaacaggtttTGACATGTACATTCACTTGTTAAACATACTCAAATTGTCAAAATGTTGGCACAAGAAGCAGTATTCAcaaactaagataaaaaaagaaaggtccAATAACAGTGCGATAATATATAACCATAAAATAAGATAAAGTATACACACATTTGAAtacaaacatgaacacacacaaggTTTCACCTAAATTTGTTATACGTATATAAGATTTGCATGGATTTAATCGTTTCGGTTAGGTTTTCATGAAGTAGTTTTAATTTCCCATGCAGCCGTCCTGTGTTCTGTCCACGGCGGCAGCCTGCCCTCCAGTGTTCAGGAGTTGATTTAATCACACTTCCTCTGATCTGCAGGCACTCCCCTGGTACCTCAGATAATTCAGCCAAGACACAATCTGTCCCACAGAGAGGGAAGTTCAGTTTGTCCCCCTGATGAAGTGAAAGAAGTATGATAACAGTTGAACATTAGATCAGGGCTAATGTTTGTTTGAGTTGCAGTGgaggaaagtaactaagtacatttactcaaaggtacactctaagaaatgaatccgtaaaataacagaaaaaaaagttctggcagctcattacccggactaaaacagaaaatgttgtGTGCAGCTGCAGTAAAACCCAGAACATTTCCTGGTATTTCAAATTCTCTCAGACAAAGCTGCCCCGTTAGTAATGTcgcaacctgatctcacagaattcctggaaatgaacacggcccccttaactcaaaatctttAAGGAGTTTCACGGAATCGCAaaaaattccgtgatgggcccgcAGCTTTTTGTTCCCTACGCTCCCTAATCCAGTTACTTACCGCTGAAATGCAGAGGGATAAATTGTGTCGCTTTCGCCTCCATGGCCGCCAAAAGTTGCAGGAGCACAGATAAAGGTCCCTTAATGCAAtctgaaatgtaaataaacacaaatacaactGTGAATCACGTTCTACGGAcaatttctgttaaaaaaaaaacaaccaatacAGTCATACAACTGTTAATGAACAGCTATTTCTTAGAGTTTACTTCTACTTTACCTGGGCATTTCATTTTGATGCTACTGTATACTTCATTAATCCGTTTAACTGTTCAGATTAGGATattacacaaaaaacaacactttatgAAATGCGGTTCATTTTTACAGATTAAACCAGTGATGCCCTGTGATTCCTTACAAAAAAGCCGTGTAGTTGGGGCCATTTGTCATGTTTCAGATTTCAGGAGATCCATAAGCTGcggttttatttaaataactatTTAAAGGTATGCAAAATATAATCATTTCTCAAAAAATAGAGCGTAGTCTGAAAGTTGAGTGAAATAATTTGTATAGCAAAATTTCTTCTCAaattttcttcttcattcacATCTCATGGTCCCTCGAAAGCATCTCCTGACCCCTTTGCAGGAGGCCCATCCCTATGTTGAGAACCACTAAATCAAACTGTGCCTAAAGTAGATAAACAACCTTCAATCTACAAGTCCTGCAGAATTAGCAGACCTCTACTTTTGATACATAtcaaagttattttttaatagagttaaagctatagtgcgtagtttctgtcgcccccatgaggaattttaagtaaCGACAACAAGCCTTTTGccaccacccctcctccacgcagttgcctGTAGCCAAGggggacacggaggattaaaaaaaaacatgatggactcttcagaagagttatcttcactcgagtttcagCACGAGAAAGTGGCCGGACAATAGAGCTGGGCaacatatcgatattatatcgatatcgtgatataagactagatatcgtcttagattttggatatcgtaatatcataatatggcataagtggtgtcttttcctggttttaaaggctgcattacagtagagtgatgtcattttctgaacttcccagactgttctagctgttctgttatttgcctttacttagtcattatatccacattactgattaccacttacttacttacttacttattatttatcaaaaatctcattgtgtaaatattttgtgaaagcaccaatagtcaacactacaatatcgttgcgatatcgaggtatttggtcaaaaatatcatgatatttgattttctccatatcgcccagccttctgaacatagccatactgagaaatccagagagagttgtgtggagctgagagtcttaattagctttgtagcaactcatttggcaatggcttgaatgcaacggacgttcattaatatcaaaaagttacgcattaAAACTTAAAGGCAAAGTACCACATTACATCAGAGCCAGTATGGCTATGATGATTACAAATAGCACAACGCTGTCTGTAAAACCTCCATTTCAAAAAAAGGTTGATTGTGTACAAAGACAACTTATTGTATGCAATTTAATTCACACTtttgtttcctttctttttaCGTATGGAGAAAATGTTACTTGCTGCTCCATTAAAGATGGAGATTGTTAAGATGGAGATTTTCAGAAGCCATTCCTGGAATCTTTAAGCATTATGCCAGATGGATTTTATGGACAAGGAAAACACATTAATCCCAAATGTcataaaaacaaagtaaaaaaaaaaaatgttacagcagATTACCTTAATTTGTTAGTCAAGACAGAAGAATTTAGACGTGGTTTGAAAAATGCTGATATTAAATATGTtgtatttatcaaaaatgtaactgtaaattGAACTGGTAATGAAGCATGCTGgaaatctgtaaagtgtcca
>TU191763
gggcaatatatcgatatcgtgatattagactagatatcgtcttagattttggatatcgtaatatggcacaagtgttgtcttttcctggttttaaaggctgcattacagtaaagtgatgtcattttatgaacttaccagactgttgtaactgttctattatttgcctttgcccacttagttattatatccaTATTACCGATGATTATTcataaaaaatctcattgtgtaaatattttgtgaaagcaccaatagtcaacactacaatatagttgcggtatcgatatcgaggtatttggtcaaaaatatcatgatatttgattttctccatatcgcccagccttctgaacatagccatactgagaaatccagagagagttgtgtggagctgagagtcttaattagctttgtagcaactcatttggcaatggcttgaatgcaacggacgttcattaatatcaaaaagttacgcattaAAACTTAAAGGCAAAGTACCACATTACATCAGAGCCAGTATGGCTATGATGATTACAAATAGCACAACGCTGTCTGTAAAACCTCCATTTCAAAAAAAGGTTGATTGTGTACAAAGACAACTTATTGTATGCAATTTAATTCACACTtttgtttcctttctttttaCGTATGGAGAAAATGTTACTTGCTGCTCCATTAAAGATGGAGATTGTTAAGATGGAGATTTTCAGAAGCCATTCCTGGAATCTTTAAGCATTATGCCAGATGGATTTTATGGACAAGGAAAACACATTAATCCCAAATGTcataaaaacaaagtaaaaaaaaaaaatgttacagcagATTACCTTAATTTGTTAGTCAAGACAGAAGAATTTAGACGTGGTTTGAAAAATGCTGATATTAAATATGTtgtatttatcaaaaatgtaactgtaaattGAACTGGTAATGAAGCATGCTGgaaatctgtaaagtgtcca
>XM_039821453.1
cacacacacacacacacacacacatgcaaaagtcAAAgtaagaagacagaaagaaaaagtccCTCAGAAAGATAACAAAATTGTGCTTGTCTTTTCTTTGGGGGGGATCAAACAAGCACTGACAGCTCAGCCATGTCACGACAGGTGGTCCAGGTCCAGCCGGAGAGCAGGGTTCAGGAGGCAGGTCAATGGAGTACTGGCCTGTGTGAGTGCCATAAAGACGTGGGTGACTGCTGCTTTGCCGTGTGCTGCCTCCCAGTGTTCACCTGTAAGGTGACCAGTGCAGTGGGTGCCTGTCCCTGTCTGCCTCTGCTGGACTGTATCGGCTGTGTCCCACCGGCATCTCTCGCCATGAGGGCGTCTGTCAGGCAACGATACGGCATACGGGGGAGTATGTGGAGCGACTGCCTGTACGGATGCTGCTGCTATCCGCTATCTTGGCTCCAGATCtccagagagctgaagagaagAGCAGCATCCCACgcctcctccttttcctcctcttcctcctcagccAGATACACTGCTCTGACCACCCTGCAGGGGGCGCACCTGGTCTAGACACATGCTGcgctgcttttattttttattttttttaaacaggtttTGACATGTACATTCACTTGTTAAACATACTCAAATTGTCAAAATGTTGGCACAAGAAGCAGTATTCAcaaactaagataaaaaaa
>XM_039821454.1
cacacacacacacacacacacacatgcaaaagtcAAAgtaagaagacagaaagaaaaagtccCTCAGAAAGATAACAAAATTGTGCTTGTCTTTTCTTTGGGGGGGATCAAACAAGCACTGACAGCCATGTCACGACAGGTGGTCCAGGTCCAGCCGGAGAGCAGGGTTCAGGAGGCAGGTCAATGGAGTACTGGCCTGTGTGAGTGCCATAAAGACGTGGGTGACTGCTGCTTTGCCGTGTGCTGCCTCCCAGTGTTCACCTGTAAGGTGACCAGTGCAGTGGGTGCCTGTCCCTGTCTGCCTCTGCTGGACTGTATCGGCTGTGTCCCACCGGCATCTCTCGCCATGAGGGCGTCTGTCAGGCAACGATACGGCATACGGGGGAGTATGTGGAGCGACTGCCTGTACGGATGCTGCTGCTATCCGCTATCTTGGCTCCAGATCtccagagagctgaagagaagAGCAGCATCCCACgcctcctccttttcctcctcttcctcctcagccAGATACACTGCTCTGACCACCCTGCAGGGGGCGCACCTGGTCTAGACACATGCTGcgctgcttttattttttattttttttaaacaggtttTGACATGTACATTCACTTGTTAAACATACTCAAATTGTCAAAATGTTGGCACAAGAAGCAGTATTCAcaaactaagataaaaaaa
>XR_005641406.1
cacacacacacacacacacacacatgcaaaagtcAAAgtaagaagacagaaagaaaaagtccCTCAGAAAGATAACAAAATTGTGCTTGTCTTTTCTTTGGGGGGGATCAAACAAGCACTGACAGCTCAGCCATGTCACGACAGGTGGTCCAGGTCCAGCCGGAGAGCAGGGTTCAGGAGGCAGGTCAATGGAGTACTGGCCTGTGTGAGTGCCATAAAGACGTGGGTGACTGCTGCTTTGCCGTGTGCTGCCTCCCAGTGTTCACCTGTAAGGTGACCAGTGCAGTGGGTGCCTGTCCCTGTCTGCCTCTGCTGGACTGTATCGGCTGTGTCCCACCGGCATCTCTCGCCATGAGGGCGTCTGTCAGGCAACGATACGGCATACGGTGGAGTGGAATGGCCCCTGTAGCTGTGATGTCGTGATACACACTGTCTGGAACAAGGCAGCTGATTGCACGCTGCACTGTGTGTCCCCAGCTCAATTACCCAGAGCTGCTGGAGCTCTGGGTAATTGTGATTACTGCCGAGAAGATGGAGACGTTTCAGGGATGAAACACCGTAGCAGCACACAGGGGAAATAGCTGCAACATCATGACCACCGGTTATTACtttagaaatgcaaacaacgTTTTCAGTCTATGTAGTTGCGTTAGTTACAGCTTAGATACTATATGCTGAGGACGCAGTGAGATCAGGACACAAGGGAACGATACATTCAACTCTTCTGAGCCAATACGATTTTAAGTTCACGATCCGATTTGATATCATACTTTTTGGacgagctgcagacaaatgacctttatacaaaatacatatattttagattcctcaaagta

Function

NR:

description
PREDICTED: PLAC8-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191762 True 3357 TUCP 0.40 4 9032947 9094204
TU191763 False 956 lncRNA 0.33 2 9032947 9105231
XM_039821453.1 False 692 mRNA 0.50 4 9035606 9094193
XM_039821454.1 False 687 mRNA 0.50 4 9035606 9094193
XR_005641406.1 False 836 transcript 0.49 4 9040965 9094193

Neighbor

gene id symbol gene type direction distance location
LOC120572315 NA coding downstream 2587 9022932 ~ 9030360 (-)
LOC120573560 NA coding downstream 12170 8991620 ~ 9020777 (-)
LOC120572423 NA coding downstream 31989 8998470 ~ 9000958 (-)
si:dkey-165a24.9 LOC104942883,LOC102291186,LOC101474743,LOC102082907 coding downstream 44709 8985251 ~ 8988238 (-)
LOC120573559 NA coding downstream 71224 8960728 ~ 8961723 (-)
cldn7a LOC104942886,LOC103374259,LOC104930852,LOC101477346,LOC103391400,LOC107095366 coding upstream 6159 9111390 ~ 9121659 (-)
chrnb1 chrnb1,LOC103358387 coding upstream 55171 9160402 ~ 9193336 (-)
fgf11a fgf11,LOC103358388,LOC101075493 coding upstream 99993 9205224 ~ 9353768 (-)
tmem102 LOC103358389,LOC101478184,LOC107084115 coding upstream 316396 9421627 ~ 9443291 (-)
LOC120573623 NA coding upstream 589275 9694506 ~ 9730233 (-)
G142143 NA non-coding downstream 133272 8871087 ~ 8899675 (-)
G142144 NA non-coding downstream 153575 8874259 ~ 8879372 (-)
G142131 NA non-coding downstream 212269 8820358 ~ 8820678 (-)
G142128 NA non-coding downstream 216886 8808670 ~ 8816061 (-)
LOC120572407 NA non-coding downstream 431359 8596678 ~ 8601588 (-)
G142182 NA non-coding upstream 17368 9122599 ~ 9123252 (-)
G142183 NA non-coding upstream 18329 9123560 ~ 9124092 (-)
G142186 NA non-coding upstream 20393 9125624 ~ 9125909 (-)
G142187 NA non-coding upstream 20787 9126018 ~ 9126234 (-)
G142215 NA non-coding upstream 92571 9197802 ~ 9205205 (-)
LOC120572366 NA other downstream 489215 8517023 ~ 8543732 (-)
LOC120572370 NA other downstream 509028 8510393 ~ 8523919 (-)
G142077 NA other downstream 567335 8465082 ~ 8465612 (-)
LOC120573543 NA other downstream 697573 8332365 ~ 8335374 (-)
LOC120572400 NA other downstream 920263 8107647 ~ 8112684 (-)
chrnb1l LOC101463714,LOC102292928,LOC102798105 other upstream 25412 9130643 ~ 9153933 (-)
tmem256 tmem256,LOC103358394 other upstream 352619 9457850 ~ 9465779 (-)
si:dkey-183c6.7 LOC103364800,LOC108242893,LOC102223112,LOC106525003,LOC106907808,LOC106948277,LOC103480784,LOC103131169 other upstream 1526244 10631475 ~ 10657973 (-)
G142669 NA other upstream 1824791 10930022 ~ 11144738 (-)
gpha2 gpha2 other upstream 2044620 11149851 ~ 11154529 (-)

Expression


Co-expression Network