G142758 (slc3a2)


Basic Information

Item Value
gene id G142758
gene name slc3a2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 11490414 ~ 11539518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU192580
GGAAATACAGGACACACCATTCATCTACTTGATTTTATAAATGCTGATTCATCTTACAGGAAGAatgtttataaatcactaaatttAGGAGAATGGTCTCGGAGACCACTATATGAGACACGCTGTGATGATAAAAGGTATACTGCAAGTTATCTGGGGTTAAAGCGTTGCTTAGCATATGTGACATAATGTTGGGGGGGGGTTATAACGGTAGTTACTTTAAGACAGTCAGTGTATGACCCATTTAGTGCCACACAGAGGTATGTGCACAGCGTACATTTTAGAGTCAAGTATAATGAGCCGATAAAAGCCATCTGAGGAGGTTTATCAAATATAGAGACGTGCTGCTTCCTCTGTTAACATCTGTGACACACTTCCACACCTGTACGTCCTGAAAATAGTGAACGTCTCATCTGATATTATCTTTGTCATAAAGAACACGCTTAAGCGCAGAACCCACTCTTATAAGAATGTTGTCAAACATTACAAAACACATGAGCACACAGGAGTCGGTACAGAATGTTGTTTATTCATTTCCAGTTCTGTTCATTAGACAGACTTCATGCCATTCCCAACCATTTTGTTTACTAGCACTCTGAAAAAGACTTCAAATCGAGTCACCATACATGTTCAAACttaaacttgtttttttctgtgtgagGAATGCCTTTCAGTGAGCACAAACAGGCTcatgaaagaaagtaaaactGTCACTAAAACAATTtctaaaagaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaacggactgCTAAAGAAATGGAATGTCTTTCACATATTTGGACAATGGTCAACAATAAAAGTTCACAAAAGAACAAAATGCTCAGTTGGTGAGTGCATGTCTGAGGTGGCTGCATCTTTTCCTAGCacacaacaatgacaaaaagTCTTACTAAAAAATGTGttataaacattatttaaaaaaaaaaaaaaaaagtaaaaacctGAATTGAACAAAGTTTGTAATGGCCAACATTCTGTATTTGTATGGCAGATTTCCTTTGACCCAATTCATTTATGTTCCGACTAAATAATCTGATAGAAAGtcctatttattaaaaaaggaagatccTGTATCTTTTGAATGTGCCATCTTATTCCTAAAGGATTGGACTGActtgaatttctttttaaaaacacttctAATGTGTAGGTTCCTATAGTTTGGCTCCCTCTTTAGCCTGTGTAGGGGAACTGCAGCAGGACGCCTTGTCCAGGTCCTAGGGTGACTTGGTCCAGGCTTACGGTGGAGTCAACCTCCAGCTGCTCTGGGTCAGTCGACAGCTTCACTGTGGCTTTCTCTGGCAACTCCACTCCTTCTGTAGGTGCCAGTTTGAGTGAGAGCGTCTCAGCTGCTGCTCCCCAGTTGACGGCCGTTATGTATCTATCGCTCTGGTCCCACAGACGGAGGAAAGAGAGCGAGGAGgcggaggagaagagagggtaGTAGTCGCCGTAGAGGAGAGAGCGCTCTTTGACTCGCTGGTCGCTGAGGGATTTGAACCACTTCTTTACAGCAACGCGCTCCTTCCGCTCAGCCTCGGCCGTGTCATTAGCAGAACCTTCAGCAGGCTCGTTCTCTATGTCCCAAACCATCTTAGGAGATGCTGTAGACTGCCTGAAGGCCGATCTCATCTCCGTAGGTAAAGACTGGGGTTCCAGGCATGGTGAACAGCAGGAGCTGGTAAAGGCGGATCAGGCCCGGAGTCGTTGCTAGCTTCGACAGCTGGTCCTTTTGGGCTGCACCGAGACCCCAGGCCACATTTCTCTGCTGAGAGTGAAGGGTGTCCATGGCCTGGATGCGCGCCACACCTGTACATAATTAGATAAAATGATCTCATGCAATGcaccatttttttgttgttgcaccaACTACCTGGTTTTCACACAATAAATGGACACACTGTAAGCTCCTGATTTAAAACACTGAGAAAGTGGAGATTAAATACACAGAATAAGGAGAGATGACGTAAAGATGAACATTAATGGATGCATTCTGTCCAAAATATTAAGATAGTGTTTGGAATAATTATAGAAACCAGCccaaaagtgaaaaagagaaataCTTGATACACATGCAAGTATGGTGAGACAACCGGGACACTCCAGCCTTACCTCCACTGCGGCTGCTGAGCAGGTCAGACAGGACCAGATCTACACCTGTGGTATTGGCGAGCTGAGACACCTCTGCAGCCGAAATACCTTCAACCACACCCATCAGCAACCTGAGACAGAGAGAATGGGGTAAGATGACACTGCTGACACTGGTTTCACTTAGTTGAAAATGTTAAGTTACGGTGAAACTTGTTTTAAGAATAGTATAcaattctatttattttttttatttgattgtgCCATTCCTCAAACCGTCCACAAGGTGTCGCGTCACCACAAGTGTGTGTAAAGAGCAACTGGCCCGGAGGCCTTTCTTGTTGATCTATGGACCCCACCCACAGTCCCCTGCAGCACTGGAATGCTTTTCATCTCCACCTTCCCTCAGGAAACATATTCATGCTCCGAAAAAATTACTTTCCTAAGATagaactgatttttttttttttttttttttttgccaaactgAGCTTCTGGTAATATTCAAACCAATTGTTCTTACCAGTGTAGTCTCCAAATTGCTTTCCCTATCTGCAGCAAATAGATTTCATTCAGAAATCTTGCAAATTAAACACTCGTGTGTTCCTGCACAGATTGTCTGCTTATGCAGAACCAAAGAGTCAGAAAATGGCAGCCGTAGTTACTTTTTATTGGTGCGGTTGCCATGGACGGCAGCCTGCAGCATTGACCAATCAACAGAGCTGGTGGCTACAGTGAGAGCAGGTAGCTTGATGCCATCGACATCCAAATTCAGCCAGTACTCTGCTGCAACCTGAAAGAGAACAAGAGCACtttagaaaaacaacacaggcaAGAACAGTTCAATGACATGGATTCTTTTCAGCAAGGAAATAACAACTTAGGAAATAAAAAGGATTACAgaagagtgtttgtgtgtcctaCCTTGACTTTCTCTAACACATCATCCACATCCACATCCCCAGTCCTGAACCAGGGAACGGCTCCCAGGTAGTTTGGAGTCAGGTCAAGCACCACAGAAATGCCTAAGaagaaaagtaaacaaaaacagttaGTGAGCCCAACATTAGGGGTTCATACAAATGCTGGTGTAAACTTTTAGACCCTAACTTATTTGTTTTATGATGACCTACCCTTCTTGTGGGCTTTTTCCATCACAGCCACAAAGGCTTTCTCATTTCCCCGGGTCGGGTTGAAATCTTTAAGATTCAGGGTGTCCGGTTGGTCGGCCTGGACGTTGTGAAGCGGGCCGAGAACCAGGCCTTTCACCTTCAACTTGTTGATTTCGTCCAACTTTGCCTCaacacCTTCCAGTCCCTCAGAGAAAGCATCCAGGTCAGAGATTTGGTACAGAGATCCTTCGTTCCACCAGTTCATCTCAGGGATGGGTTTACAGCGAGGGGCCTGGACTATGATCACTATGGCTCCAGCCAGCATGCCTACCCAGCCCAGCCAAAACAGGACAAGAAGCACCCAACGGGTTCGCACCCATCTAAACACAGAGGATGGAAATAGGAAAATAAGATGTTATGACCACTGATTGTATGCCACACACCAATACAAG
>TU192581
aaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacggactgCTAAAGAAATGGAATGTCTTTCACATATTTGGACAATGGTCAACAATAAAAGTTCACAAAAGAACAAAATGCTCAGTTGGTGAGTGCATGTCTGAGGTGGCTGCATCTTTTCCTAGCacacaacaatgacaaaaagTCTTACTAAAAAATGTGttataaacattatttaaaaaaaaaaaaaaaaagtaaaaacctGAATTGAACAAAGTTTGTAATGGCCAACATTCTGTATTTGTATGGCAGATTTCCTTTGACCCAATTCATTTATGTTCCGACTAAATAATCTGATAGAAAGtcctatttattaaaaaaggaagatccTGTATCTTTTGAATGTGCCATCTTATTCCTAAAGGATTGGACTGActtgaatttctttttaaaaacacttctAATGTGTAGGTTCCTATAGTTTGGCTCCCTCTTTAGCCTGTGTAGGGGAACTGCAGCAGGACGCCTTGTCCAGGTCCTAGGGTGACTTGGTCCAGGCTTACGGTGGAGTCAACCTCCAGCTGCTCTGGGTCAGTCGACAGCTTCACTGTGGCTTTCTCTGGCAACTCCACTCCTTCTGTAGGTGCCAGTTTGAGTGAGAGCGTCTCAGCTGCTGCTCCCCAGTTGACGGCCGTTATGTATCTATCGCTCTGGTCCCACAGACGGAGGAAAGAGAGCGAGGAGgcggaggagaagagagggtaGTAGTCGCCGTAGAGGAGAGAGCGCTCTTTGACTCGCTGGTCGCTGAGGGATTTGAACCACTTCTTTACAGCAACGCGCTCCTTCCGCTCAGCCTCGGCCGTGTCATTAGCAGAACCTTCAGCAGGCTCGTTCTCTATGTCCCAAACCATCTTAGGAGATGCTGTAGACTGCCTGAAGGCCGATCTCATCTCCGTAGGTAAAGACTGGGGTTCCAGGCATGGTGAACAGCAGGAGCTGGTAAAGGCGGATCAGGCCCGGAGTCGTTGCTAGCTTCGACAGCTGGTCCTTTTGGGCTGCACCGAGACCCCAGGCCACATTTCTCTGCTGAGAGTGAAGGGTGTCCATGGCCTGGATGCGCGCCACACCTGTACATAATTAGATAAAATGATCTCATGCAATGcaccatttttttgttgttgcaccaACTACCTGGTTTTCACACAATAAATGGACACACTGTAAGCTCCTGATTTAAAACACTGAGAAAGTGGAGATTAAATACACAGAATAAGGAGAGATGACGTAAAGATGAACATTAATGGATGCATTCTGTCCAAAATATTAAGATAGTGTTTGGAATAATTATAGAAACCAGCccaaaagtgaaaaagagaaataCTTGATACACATGCAAGTATGGTGAGACAACCGGGACACTCCAGCCTTACCTCCACTGCGGCTGCTGAGCAGGTCAGACAGGACCAGATCTACACCTGTGGTATTGGCGAGCTGAGACACCTCTGCAGCCGAAATACCTTCAACCACACCCATCAGCAACCTGAGACAGAGAGAATGGGGTAAGATGACACTGCTGACACTGGTTTCACTTAGTTGAAAATGTTAAGTTACGGTGAAACTTGTTTTAAGAATAGTATAcaattctatttattttttttatttgattgtgCCATTCCTCAAACCGTCCACAAGGTGTCGCGTCACCACAAGTGTGTGTAAAGAGCAACTGGCCCGGAGGCCTTTCTTGTTGATCTATGGACCCCACCCACAGTCCCCTGCAGCACTGGAATGCTTTTCATCTCCACCTTCCCTCAGGAAACATATTCATGCTCCGAAAAAATTACTTTCCTAAGATagaactgatttttttttttttttttttttttgccaaactgAGCTTCTGGTAATATTCAAACCAATTGTTCTTACCAGTGTAGTCTCCAAATTGCTTTCCCTATCTGCAGCAAATAGATTTCATTCAGAAATCTTGCAAATTAAACACTCGTGTGTTCCTGCACAGATTGTCTGCTTATGCAGAACCAAAGAGTCAGAAAATGGCAGCCGTAGTTACTTTTTATTGGTGCGGTTGCCATGGACGGCAGCCTGCAGCATTGACCAATCAACAGAGCTGGTGGCTACAGTGAGAGCAGGTAGCTTGATGCCATCGACATCCAAATTCAGCCAGTACTCTGCTGCAACCTGAAAGAGAACAAGAGCACtttagaaaaacaacacaggcaAGAACAGTTCAATGACATGGATTCTTTTCAGCAAGGAAATAACAACTTAGGAAATAAAAAGGATTACAgaagagtgtttgtgtgtcctaCCTTGACTTTCTCTAACACATCATCCACATCCACATCCCCAGTCCTGAACCAGGGAACGGCTCCCAGGTAGTTTGGAGTCAGGTCAAGCACCACAGAAATGCCTAAGaagaaaagtaaacaaaaacagttaGTGAGCCCAACATTAGGGGTTCATACAAATGCTGGTGTAAACTTTTAGACCCTAACTTATTTGTTTTATGATGACCTACCCTTCTTGTGGGCTTTTTCCATCACAGCCACAAAGGCTTTCTCATTTCCCCGGGTCGGGTTGAAATCTTTAAGATTCAGGGTGTCCGGTTGGTCGGCCTGGACGTTGTGAAGCGGGCCGAGAACCAGGCCTTTCACCTTCAACTTGTTGATTTCGTCCAACTTTGCCTCaacacCTTCCAGTCCCTCAGAGAAAGCATCCAGGTCAGAGATTTGGTACAGAGATCCTTCGTTCCACCAGTTCATCTCAGGGATGGGTTTACAGCGAGGGGCCTGGACTATGATCACTATGGCTCCAGCCAGCATGCCTACCCAGCCCAGCCAAAACAGGACAAGAAGCACCCAACGGGTTCGCACCCATCTAAACACAGAGGATGGAAATAGGAAAATAAGATGTTATGACCACTGATTGTATGCCACACACCAATACAAG

Function

symbol description
slc3a2 Enables amino acid transmembrane transporter activity and double-stranded RNA binding activity. Involved in carboxylic acid transport and viral entry into host cell. Acts upstream of or within response to exogenous dsRNA. Located in cell surface; nucleoplasm; and plasma membrane. Part of amino acid transport complex; apical plasma membrane; and basolateral plasma membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: 4F2 cell-surface antigen heavy chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192580 True 3675 lncRNA 0.43 5 11490414 11495738
TU192581 False 2951 lncRNA 0.44 6 11490414 11539518

Neighbor

gene id symbol gene type direction distance location
trnam-cau_43 NA coding downstream 5858 11484485 ~ 11484556 (-)
snx15 snx15 coding downstream 8808 11474794 ~ 11481606 (-)
trnal-aag_9 NA coding downstream 12216 11478117 ~ 11478198 (-)
trnal-aag_8 NA coding downstream 15071 11475262 ~ 11475343 (-)
tmem179ba tmem179b coding downstream 37537 11445612 ~ 11452877 (-)
LOC120573491 lrfn4,LOC103363228,LOC102311587 coding upstream 184979 11724497 ~ 11759859 (-)
spag17 LOC104959999,LOC104962483 coding upstream 397092 11936610 ~ 11967772 (-)
trnag-gcc NA coding upstream 417811 11957329 ~ 11957399 (-)
LOC120573708 ddit4l,LOC103390244 coding upstream 430889 11970407 ~ 11973487 (-)
LOC120573457 LOC104966162 coding upstream 438375 11977893 ~ 11991500 (-)
G142751 NA non-coding downstream 42903 11441681 ~ 11447511 (-)
LOC120573191 NA non-coding downstream 50578 11439304 ~ 11439836 (-)
G142744 NA non-coding downstream 56567 11409918 ~ 11433847 (-)
G142748 NA non-coding downstream 61479 11423406 ~ 11428935 (-)
G142739 NA non-coding downstream 158913 11330027 ~ 11331501 (-)
G142766 LOC103363230 non-coding upstream 14268 11553786 ~ 11562932 (-)
G142790 NA non-coding upstream 302749 11842267 ~ 11856354 (-)
LOC120573458 NA non-coding upstream 446311 11985829 ~ 11986624 (-)
G142846 NA non-coding upstream 683755 12223273 ~ 12224139 (-)
G142839 NA non-coding upstream 731317 12270835 ~ 12275611 (-)
prox3 LOC104947722,LOC103363229 other downstream 23395 11455015 ~ 11467019 (-)
G142745 NA other downstream 46475 11441961 ~ 11443939 (-)
gpha2 gpha2 other downstream 335885 11149851 ~ 11154529 (-)
G142669 NA other downstream 345676 10930022 ~ 11144738 (-)
si:dkey-183c6.7 LOC103364800,LOC108242893,LOC102223112,LOC106525003,LOC106907808,LOC106948277,LOC103480784,LOC103131169 other downstream 832441 10631475 ~ 10657973 (-)
LOC120573414 LOC104960590,LOC106514884,LOC103390236,LOC107084127,LOC106908847,LOC101464045,LOC100704366,LOC102310755,LOC102193047,LOC102788271,LOC103369314,LOC103129513 other upstream 370933 11910451 ~ 11935773 (-)
LOC120573137 ppp3ca,LOC103369319 other upstream 455396 11994914 ~ 12063426 (-)
G142916 NA other upstream 874236 12413754 ~ 12415155 (-)
rpl34 rpl34,LOC107566275 other upstream 1059235 12598753 ~ 12602673 (-)
LOC120572742 rbpms,LOC107086924,LOC107377421 other upstream 3547347 15086865 ~ 15121956 (-)

Expression


Co-expression Network