nop10


Basic Information

Item Value
gene id nop10
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 20864757 ~ 20867106 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU195688
CGCCCTGCGACTGAGTGTAACTTCGCTGCACGTGGATTTCCGAATAGAAAGAGCGTGTTACCTGCTACTTTTGAGATTTTCGTGGATATAAAACAAGctctttgatatattttgaaacgTTGAGAGTAACTTGTCGTCAAGATGTTTCTGCAGTTTTACCTAAATGATAACGGGGACAGAGTTTACACTCTgaagATTTGTCCTGATGGGCAGCCCACCAGCTCGGCCCACCCGGCTCGCTTCTCCCCAGACGACAAGTTCTCCCGACACCGGGTGACGGTGAAGAAACGCTTCGGCCTTCTGCTCACCCAGCGACCCAGACCTGttctgtgagagagagagagatggagggatggagatcAGACCAAGGAATTGAGTGATGAAGGCTCAGATGAGACTCTAAAGCAAACGGTCAAAAACACATTGAGGATCCCAATTTATGAACGTGCAGCCAGGATTTGTCAAGTTTCACCCAAATTCAGGGGGCTGCTCATGCGTTGGATATCAACAGTCATTGAtgttatggatttttttttttttctg
>XM_039822962.1
AATTCTAAACCGGATATCCGCCCTGCGACTGAGTGTAACTTCGCTGCACGTGGATTTCCGAATAGAAAGAGCGTGTTACCTGCTACTTTTGAGATTTTCGTGGATATAAAACAAGctctttgatatattttgaaacgTTGAGAGTAACTTGTCGTCAAGATGTTTCTGCAGTTTTACCTAAATGATAACGGGGACAGAGTTTACACTCTgaagAAGATTTGTCCTGATGGGCAGCCCACCAGCTCGGCCCACCCGGCTCGCTTCTCCCCAGACGACAAGTTCTCCCGACACCGGGTGACGGTGAAGAAACGCTTCGGCCTTCTGCTCACCCAGCGACCCAGACCTGttctgtgagagagagagagatggagggatggagatcAGACCAAGGAATTGAGTGATGAAGGCTCAGATGAGACTCTAAAGCAAACGGTCAAAAACACATTGAGGATCCCAATTTATGAACGTGCAGCCAGGATTTGTCAAGTTTCACCCAAATTCAGGGGGCTGCTCATGCGTTGGATATCAACAGTCATTGAtgttatggatttttttttttttctgtagtttGACATTCTTTTGACATAATGTTATATAGTTTTCATTCCAAATAAATGTTTTGGTTGATTGTT

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0072588 box H/ACA RNP complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
K11130 NOP10, NOLA3; H/ACA ribonucleoprotein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU195688 False 543 lncRNA 0.47 2 20864825 20867088
XM_039822962.1 True 632 mRNA 0.44 2 20864757 20867106

Neighbor

gene id symbol gene type direction distance location
tox4b tox4 coding downstream 38668 20811229 ~ 20826089 (-)
supt16h NA coding downstream 56747 20789502 ~ 20808010 (-)
LOC120573323 NA coding downstream 88285 20764633 ~ 20776472 (-)
LOC120573354 NA coding downstream 102255 20756541 ~ 20762502 (-)
LOC120573324 NA coding downstream 110896 20750083 ~ 20753861 (-)
lpcat4 lpcat4 coding upstream 8509 20875615 ~ 20885590 (-)
emc4 emc4 coding upstream 20504 20887610 ~ 20892834 (-)
si:cabz01101003.1 LOC103355780,LOC101167576,LOC103480376 coding upstream 26860 20893966 ~ 20905541 (-)
khnyn NA coding upstream 67412 20934518 ~ 20946982 (-)
si:dkeyp-74b6.2 LOC103144634,LOC104951882,LOC103355776,LOC102776090 coding upstream 96602 20963708 ~ 20969411 (-)
G145023 NA non-coding downstream 19504 20843574 ~ 20845253 (-)
LOC120573348 NA non-coding downstream 78368 20783569 ~ 20786389 (-)
G144996 NA non-coding downstream 153984 20679910 ~ 20710773 (-)
G144994 NA non-coding downstream 170085 20674711 ~ 20694672 (-)
LOC120573439 NA non-coding downstream 342632 20521170 ~ 20522125 (-)
G145076 NA non-coding upstream 63960 20931066 ~ 20931721 (-)
G145112 NA non-coding upstream 109549 20976655 ~ 20978016 (-)
G145106 LOC104951910 non-coding upstream 188718 21055824 ~ 21100806 (-)
G145141 NA non-coding upstream 291796 21158902 ~ 21161476 (-)
G145213 NA non-coding upstream 608277 21475383 ~ 21479973 (-)
LOC120573300 slc12a6 other downstream 868 20827283 ~ 20863889 (-)
G144730 LOC100695354,LOC106632790,LOC105940461,LOC104965881,LOC101481059,LOC106632521,LOC103369240,LOC102791106 other downstream 1067227 19776680 ~ 19797530 (-)
si:cabz01074946.1 NA other downstream 1198965 19657083 ~ 19665792 (-)
LOC120572670 NA other downstream 1511451 19282933 ~ 19353306 (-)
prkd4 LOC103376196 other downstream 1598404 19247950 ~ 19266353 (-)
LOC120573168 LOC103355779 other upstream 39349 20906455 ~ 20929559 (-)
si:dkey-172j4.3 LOC102306481,LOC103363024,LOC100708735,LOC101468909,LOC102781820,LOC101073787,LOC108246481,LOC106609052 other upstream 484136 21351242 ~ 21438456 (-)
G145209 NA other upstream 536749 21403855 ~ 21434195 (-)
ccnb3 ccnb3 other upstream 1014184 21881290 ~ 21979426 (-)
shroom4 shroom4,LOC107741461,LOC107562256,LOC107691917 other upstream 1178395 22045501 ~ 22126481 (-)

Expression


Co-expression Network