G145345


Basic Information

Item Value
gene id G145345
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 22232334 ~ 22257278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU196134
CCACGTTTTCAACTTGTGTATTTACATTCACATGCCAGCAGATGGAAGCCTTGTCCAATAATGTTGAAACTCcaacagtttataaaatattttgaccattCATTATCTTTGTTTAAACATATATGCGGCTATGATTCTGTATGCTAGACCTTAACTGGTAACTACATTTTGTTATATATTCTATTCATGGCACATTTATCTGTTGATATGGTTAAATtatcaaacattaaacattcatCAGTGTGCTAAATCACTACATGCCATACTGTATGTAGTGTCTGTCTGCTCTTTTAAATGACAAACATTCACTCCAGCTCAGTTTTCACTTTctttatttccccctcaaaacTCAGAGCCGTAACAAAAATacaagcatttctttttttttatatgatctCAGTcatttacatattcatatagATGTACAAGTGAGAGCCGGTGAGCAAAAGTGCTTTAAAAATCATCATCTTTGAATAATATTCATTTCATCATTagaaaaacaaggaaaagagaCTGCACGTaaaaccaacaacaaaataagacTTCAATCTACAGGTTTTAAAGTAAAtatgatgaagaaaaaaaaaaaaaaaaaaaaaaaagaggaatgaATCAGTGCAGAGTCTACTTCATTTTCACAAGCAGACCTGGCAGCAGAGCAGTGGCTGAACATTTCCATTACTGTGAAGAGGAAACCTTGTAACAGCGACCTTTTAACAGATATATCACTGCTTACGTCGAAGGTTTTCACAGGCCTTGATGTGCTGGAACATTTTTCATGACCCGGAGGCCCAGAGGCAACGGCCGAGCGTGCAACAAATCACTGCTGTCACAGAGAAACTGTAAATCCACTTCATTCGTTGTCGGACCGTGAAGGTGTACACTCAGGGCCGTTTCTAGCTTTTGGCGGGCCCTGTGCAAGATGCTGTTTGGGGGCCCCTtctacaagtgtgtgtgtgtggggggggggttcaaaCCTTTAAGATGATCTGTGGAGATGCATCAATCTGTTACACTTTAGGAGGAAAACAGGCtagatttgtaaaaaaaaaaaaaaaaactctcaaatTCTCGAGTTGACTCAAGATACAGATTTTACAGTTTTAGGTGTGGTATTCCAAGCTAAATTTAAACCAAAATATATAAGAATATTTTGCACGGAGTTAAGTTTTTGTTATTGGTCACCAAATAGCTGAGGTATATTTTGGTTCAAAAGGTTAATCTGCAAATGTCGGGCGTCAAGGagaagaggaaatgaaagcCCTCAGACGATTCAAACATCTCGACCAGACAACTTCtcagggggggagggggaggaggaggcggcgcCCCTTCACACAGCAAAAAATAACATTCACTTAGCTGGGATCAAGGCCGGaccacaaaacaacacacacacacacacacacacacacacacacacacacacacacacacacacagggacttTAAAACAATGTCGAGCAGATGGAAACAAACACAAGACTGTCTTCGATTTGAAGAATGTTATTTTGACCCACTTAGACGACGAgacggaggaagagaggaatCTTTTGGATTTGGAATTGATGAGAGGCATCTCCATTTCTTTCAATAAAGCGCTTGTTGCGAGGGAAACATCTTGCAAATCCCTCCGTCAAATTATTCCTTCATCGGGTTTTCATTAATCGCTGCTTCTCGCGTTtcattaaagaaagaaaaggaagttCATTGACTGTAACCAAGACCCTAATCGACATCAAAAAGTGGTATCaggcagctgtgtttgtgtggaggGAAAAATAGCCGGCTTGTTGAGgaactgagtgtgtgtgtaagctgACCCGTCTGTATCTTTATAAATTAACGAGGCCCGGCAAGTTTTTTCCTCTGCCAGTGGTTTACATGTGGACGGATTACCTGCTGCTCATAGtttcccctcacacacacacacactggcattTTCAGACTTGCATACAGTCTAACATCACTATCTCTCTTCATgcatgcgcgcgcgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacaca
>TU196135
CCACGTTTTCAACTTGTGTATTTACATTCACATGCCAGCAGATGGAAGCCTTGTCCAATAATGTTGAAACTCcaacagtttataaaatattttgaccattCATTATCTTTGTTTAAACATATATGCGGCTATGATTCTGTATGCTAGACCTTAACTGGTAACTACATTTTGTTATATATTCTATTCATGGCACATTTATCTGTTGATATGGTTAAATtatcaaacattaaacattcatCAGTGTGCTAAATCACTACATGCCATACTGTATGTAGTGTCTGTCTGCTCTTTTAAATGACAAACATTCACTCCAGCTCAGTTTTCACTTTctttatttccccctcaaaacTCAGAGCCGTAACAAAAATacaagcatttctttttttttatatgatctCAGTcatttacatattcatatagATGTACAAGTGAGAGCCGGTGAGCAAAAGTGCTTTAAAAATCATCATCTTTGAATAATATTCATTTCATCATTagaaaaacaaggaaaagagaCTGCACGTaaaaccaacaacaaaataagacTTCAATCTACAGGTTTTAAAGTAAAtatgatgaagaaaaaaaaaaaaaaaaaaaaaaaagaggaatgaATCAGTGCAGAGTCTACTTCATTTTCACAAGCAGACCTGGCAGCAGAGCAGTGGCTGAACATTTCCATTACTGTGAAGAGGAAACCTTGTAACAGCGACCTTTTAACAGATATATCACTGCTTACGTCGAAGGTTTTCACAGGCCTTGATGTGCTGGAACATTTTTCATGACCCGGAGGCCCAGAGGCAACGGCCGAGCGTGCAACAAATCACTGCTGTCACAGAGAAACTGTAAATCCACTTCATTCGTTGTCGGACCGTGAAGGTGTACACTCAGGGCCGTTTCTAGCTTTTGGCGGGCCCTGTGCAAGATGCTGTTTGGGGGCCCCTtctacaagtgtgtgtgtgtggggggggggttcaaaCCTTTAAGATGATCTGTGGAGATGCATCAATCTGTTACACTTTAGGAGGAAAACAGGCtagatttgtaaaaaaaaaaaaaaaaactctcaaatTCTCGAGTTGACTCAAGATACAGATTTTACAGTTTTAGGTGTGGTATTCCAAGCTAAATTTAAACCAAAATATATAAGAATATTTTGCACGGAGTTAAGTTTTTGTTATTGGTCACCAAATAGCTGAGGTATATTTTGGTTCAAAAGGTTAATCTGCAAATGTCGGGCGTCAAGGagaagaggaaatgaaagcCCTCAGACGATTCAAACATCTCGACCAGACAACTTCtcagggggggagggggaggaggaggcggcgcCCCTTCACACAGCAAAAAATAACATTCACTTAGCTGGGATCAAGGCCGGaccacaaaacaacacacacacacacacacacacacacacacacacacacacacacacacacacagggacttTAAAACAATGTCGAGCAGATGGAAACAAACACAAGACTGTCTTCGATTTGAAGAATGTTATTTTGACCCACTTAGACGACGAgacggaggaagagaggaatCTTTTGGATTTGGAATTGATGAGAGGCATCTCCATTTCTTTCAATAAAGCGCTTGTTGCGAGGGAAACATCTTGCAAATCCCTCCGTCAAATTATTCCTTCATCGGGTTTTCATTAATCGCTGCTTCTCGCGTTtcattaaagaaagaaaaggaagttCATTGACTGTAACCAAGACCCTAATCGACATCAAAAAGTGGTATCaggcagctgtgtttgtgtggaggGAAAAATAGCCGGCTTGTTGAGgaactgagtgtgtgtgtaagctgACCCGTCTGTATCTTTATAAATTAACGAGGCCCGGCAAGTTTTTTCCTCTGCCAGTGGTTTACATGTGGACGGATTACCTGCTGCTCATAGtttcccctcacacacacacacactggcattTTCAGACTTGCATACAGTCTAACATCACTATCTCTCTTCATgcatgcgcgcgcgcacacgcacacacacacacacacacacacacacacacacacacacacacacacaccctgtgaAGTCTGTGTGTAACTGAACAAGTGCCTGTTTCATGGTTGCTACTCCCATTTCCCTGCTGTAATACCATCCCcatgcttctgtgtgtgtgtttatttcggTGCCTTTGTATGCCGCACATAGCTGGGtttcagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196134 False 2070 lncRNA 0.41 2 22247223 22257278
TU196135 True 2251 lncRNA 0.41 2 22232334 22257278

Neighbor

gene id symbol gene type direction distance location
phka1a phka1 coding downstream 32285 22164235 ~ 22200049 (-)
clcn5b clcn5 coding downstream 192769 22000595 ~ 22039565 (-)
htr2cl1 LOC101072775 coding downstream 548982 21537147 ~ 21683352 (-)
zgc:109889 LOC103480395,LOC103144648,LOC102211070,LOC101469879 coding downstream 697930 21488632 ~ 21534404 (-)
rab39bb rab39b,LOC107091979,LOC106527197 coding downstream 1047877 21167499 ~ 21184457 (-)
usp12b usp12,LOC107707922,LOC103480258,LOC103363176 coding upstream 269311 22526589 ~ 22550975 (-)
LOC120573632 NA coding upstream 313518 22570796 ~ 22573146 (-)
LOC120573633 NA coding upstream 316273 22573551 ~ 22580271 (-)
LOC120573582 NA coding upstream 324042 22581320 ~ 22605991 (-)
dachb dach2,LOC103363055,LOC103389227 coding upstream 619412 22876690 ~ 22978132 (-)
G145343 NA non-coding downstream 1020 22231072 ~ 22231314 (-)
G145337 NA non-coding downstream 30391 22201581 ~ 22201943 (-)
G145334 NA non-coding downstream 76627 22155410 ~ 22155707 (-)
G145325 NA non-coding downstream 79248 22147578 ~ 22153086 (-)
G145327 NA non-coding downstream 152843 22079134 ~ 22079491 (-)
LOC120572729 NA non-coding upstream 3183 22260461 ~ 22260937 (-)
G145395 NA non-coding upstream 207271 22464549 ~ 22471825 (-)
LOC120573387 NA non-coding upstream 350362 22607640 ~ 22608359 (-)
LOC120573226 NA non-coding upstream 487670 22744948 ~ 22746278 (-)
G145508 NA non-coding upstream 557292 22814570 ~ 22814816 (-)
G145342 NA other downstream 1832 22230059 ~ 22230502 (-)
shroom4 shroom4,LOC107741461,LOC107562256,LOC107691917 other downstream 105853 22045501 ~ 22126481 (-)
ccnb3 ccnb3 other downstream 252908 21881290 ~ 21979426 (-)
si:dkey-172j4.3 LOC102306481,LOC103363024,LOC100708735,LOC101468909,LOC102781820,LOC101073787,LOC108246481,LOC106609052 other downstream 793878 21351242 ~ 21438456 (-)
G145509 trpc5,LOC103389248 other upstream 557628 22814906 ~ 22817623 (-)
LOC120572139 NA other upstream 1592392 23849670 ~ 23855268 (-)
LOC120572715 NA other upstream 1797722 24055000 ~ 24075036 (-)
LOC120572219 NA other upstream 1874948 24132226 ~ 24140420 (-)
LOC120573113 NA other upstream 1976363 24233641 ~ 24363065 (-)

Expression


Co-expression Network