XLOC_004827 (si:ch73-205h11.1)


Basic Information

Item Value
gene id XLOC_004827
gene name si:ch73-205h11.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31537604 ~ 31556004 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009531
GGGAGGGCGTTAAAGACGGACAAACTCAAGCTCTGCCTACGACAAGCAATTTAAGGAGACCACTGAAGAAAAGGGATCTTATAGAGATCACTTCTACAATGAAGAACCAAAGGAGAGAATTGACTGTTTGTCTGCCTAATAACAAAGAGCTGAGCTTGACTGTTGGGGTTAAGGACAGAGGTCAAGAGGTGTTTAACCAGCTGTCTGAGCTTCTTGGCATCTCTGATCTTCATCTCTTTGGTCTGAGTGTAATAAAGGACAATCAACCTCTGTTCTTGGATCTGGAGAAGAAATTGTCCTTGTATCTCCCGAAGTCCTGGAAAAAGAATAGAGCAAAGGAAAAGGTGATTCTCTCACTGCGCGTGCAGTTCTTTGTGGAAAATGCTCAGCTAATTGTAAACCGTGAAGCCTGTCAGCTGTATTATGCCGAGTTGAAAGGGAGAGTTTTGAGATCTGAGTGCTTTGAGCATGAAGGATTGTACTTCCAACTGGTTGCATACGCCCTGCAGGCTGATCTGGGGGACTACCAAGACCAAAACTTTCAATACTTCAGTCCGCTGGCATATTTCCCCTTTTGGATTGTACAAAAGCATGGCAATGATTATATCCTGGAGCACACCCCAACCTTGCACAAGGAGCTTAAGGGAGTGCCATCCAGTGAGGCTGCCTTGCTTTTCTTACAGGACGTGTTTACCTTGATCGATGTGCCCGTCACCGTCTATAGACTCTTCAAAGGAAAGAGGAAAACACAAAACTGTGTCATCTTGGGCCTGACATCAACAGGACTGCAGATCTCTGAGATGCTGAATGGAGAACATCAGTTTCTGTATAATTTGCCGTGGTCCACCATTAATTCCATTAGCTTTCAGGGCAGAAAGTTTGAGATTCGTGCTGAGGTCTTGTTTGAGAAGAGTTTGCGATTGTTCAGTTGTTCAATCCTTCATGCCAAGCACCTGCTCCAGCACATAAGCAACAGTCACCGAATGCATCTCAACACCAAGCGGTTGATTGCACAATCAGATGGAGGGAGACACAGAGAAATGTACATCACAGATGGAGCTGATCTGGACATAGAGGACAGTGATGATGAACTTCCACATATGAAATTGTTTTTTAACCAGAAGCCTTTTTCTTGCACCACTGAATGTGGAAATGATAGAGGAGATGAGTACAGTTTAGAGATGAGTGTTGATGAGCCGGAGGAGATGTTTGTGGATGATCCTGAAGACGTCCTGCGTTTATTTGAGCTGCTGGAGGGAGTATCTGTGGATGATCCTTTACTTCTGCCTATTTCACAATGGAAAGatctcacagaaatgaatgacatatGA

Function

symbol description
si:ch73-205h11.1 Predicted to be involved in positive regulation of hippo signaling. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasmic side of apical plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096757

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009531 True 1331 mRNA 0.44 12 31537604 31556004

Neighbor

gene id symbol gene type direction distance location
XLOC_004826 gpam coding upstream 3514 31494830 ~ 31534090 (+)
XLOC_004825 gucy2g coding upstream 61490 31460877 ~ 31476114 (+)
XLOC_004824 zdhhc6 coding upstream 99022 31422557 ~ 31438582 (+)
XLOC_004823 NA coding upstream 261265 31275759 ~ 31276339 (+)
XLOC_004822 CR456684.3 coding upstream 329053 31208436 ~ 31208551 (+)
XLOC_004828 NA coding downstream 12184 31568188 ~ 31568526 (+)
XLOC_004829 NA coding downstream 27372 31583376 ~ 31603515 (+)
XLOC_004830 NA coding downstream 52885 31608889 ~ 31631297 (+)
XLOC_004831 dnmbp coding downstream 82041 31638045 ~ 31710590 (+)
XLOC_004832 habp2 coding downstream 157235 31713239 ~ 31720066 (+)
XLOC_004821 CR456684.1 non-coding upstream 341654 31195826 ~ 31195950 (+)
XLOC_004820 CR751608.1 non-coding upstream 584912 30933851 ~ 30952692 (+)
XLOC_004815 NA non-coding upstream 886578 30636385 ~ 30651026 (+)
XLOC_004836 CR450698.1 non-coding downstream 239027 31795031 ~ 31818605 (+)
XLOC_004837 dre-mir-2196 non-coding downstream 360939 31916943 ~ 31917052 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_07605652_07611233 NA coding CI01000063 null 7605613 ~ 7611233 (-)