XLOC_004828


Basic Information

Item Value
gene id XLOC_004828
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31568188 ~ 31568526 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010749
CATAACGTatgatgtatttttaaatgaaattctaCTCATCACCCTAAAGAACCAGATTCTGAAGAACCTGCAGAACACAGTGAAGAACCCTCAGAACCCAATACTGCATCAGCTCTGTCAAAGAGCTTTCCTCTAATTGCAGCATGTGTTATGAAAGCTATCTGTGTGGCTGTATTTGAATACGAATCCATTCATTGATGTAACATTTAGCTATATTTAAGCTACATATCCTAcatttatattaagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010749 True 247 lncRNA 0.36 2 31568188 31568526

Neighbor

gene id symbol gene type direction distance location
XLOC_004827 si:ch73-205h11.1 coding upstream 12184 31537604 ~ 31556004 (+)
XLOC_004826 gpam coding upstream 34098 31494830 ~ 31534090 (+)
XLOC_004825 gucy2g coding upstream 92074 31460877 ~ 31476114 (+)
XLOC_004824 zdhhc6 coding upstream 129606 31422557 ~ 31438582 (+)
XLOC_004823 NA coding upstream 291849 31275759 ~ 31276339 (+)
XLOC_004829 NA coding downstream 14850 31583376 ~ 31603515 (+)
XLOC_004830 NA coding downstream 40363 31608889 ~ 31631297 (+)
XLOC_004831 dnmbp coding downstream 69519 31638045 ~ 31710590 (+)
XLOC_004832 habp2 coding downstream 144713 31713239 ~ 31720066 (+)
XLOC_004833 RNF157 coding downstream 160549 31729075 ~ 31765822 (+)
XLOC_004822 CR456684.3 non-coding upstream 359637 31208436 ~ 31208551 (+)
XLOC_004821 CR456684.1 non-coding upstream 372238 31195826 ~ 31195950 (+)
XLOC_004820 CR751608.1 non-coding upstream 615496 30933851 ~ 30952692 (+)
XLOC_004815 NA non-coding upstream 917162 30636385 ~ 30651026 (+)
XLOC_004836 CR450698.1 non-coding downstream 226505 31795031 ~ 31818605 (+)
XLOC_004837 dre-mir-2196 non-coding downstream 348417 31916943 ~ 31917052 (+)
XLOC_004841 NA non-coding downstream 601942 32170468 ~ 32186567 (+)

Expression


Co-expression Network