trmt10a (trmt10a)


Basic Information

Item Value
gene id trmt10a
gene name trmt10a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1508801 ~ 1519565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821371.1
GCATCTTGTCGCGGTTAAATGACATCATACGCGCGCCAACATAACATTCGGTACATGTGGAGCTGTCAATGATGTGGAACTGTGGGGCTAAATTGAACAGTTTATTTAGTTGTTAGTCTGTTTTCTTTGTCCGTGGTTGGATATCCGGGCGGTGGCGCACTTTCAAGAGGTTTCGTACTTCGTGGAATTATAAAGAAGGACTCTGCTTCTATTAAATGCTGCCAGTGAGCTTCCTGCAGAGAGCAGCCAGGACGCTAACATCAACAGCTAGCTAGCCGGTTGATAGAGCAACATTAGCCGGCAGACAGTCGTCGTCTGTGCTCTCCACACATGGCTGATGACAGTGTGAAAATTGAAGCCTCAGCCCAGCAGGACAAGGATAACGGAGCTAACGAGAGCAGCCAGAAGACTGAGAGTAGTAATAATGGAGAGAATGCAGCAGGAAACCAAACAGTGTCCAAAAGGCAAAAGAAGAAGCTTCTGAAACAGCAGAAAtgggaagaagagagagaactACGAAAGCAGAAACGAAAGGAGAGGAAGCAGCAGCGTCGGCTGCAGAGGCACAACCATCCGGAGGAGCAGGGAGGAGAGGCCCAACACGTGAGGAAACGTCCCCGCAGAGAGGTGACGCCCAGCTCGCTGAGGCTGGTGGTGGACTGCAGCTTCGACAACCTCATGCTGaccaagGATGTCCAGAAGCTTCACAAACAGATCCAGCGCTGCTATGCTGAGAACAGACGAGCCACGCATCCAGTGCAGGTGTATCTGACCAGCCTGGGAGGACAGCTGAAACAGAGCATGGATGAAAAGGACAAAGGATGGGTGAACTGGAAGGACATCAGCATCAAAACTGAGCACTACAGCGAAGTGGTGGCGAAGGAGGAGCTGGTGTACCTGACATCGGACTCTCCCAACGTCCTGGAAGAGCTGGACCACACAAAGGCCTACGTGATAGGAGGCCTGGTGGACCACAACCACCATAAGgggATCACTTTTGAGAGGGCGAAGGAGCTGGGGATCGATCACGCTCAGCTTCCTCTGAGCAGTTTTGTCAAGATGAACAGTCGGAAGGTTCTGGCAGTCAATCACGTGTTTGAGATCATCCTGGCCTACTTGGAGAAGGGCAGCTGGCAGGAGGCCTTCTTCACCGTCCTGCCTCAGAGGAAAGGAGCAGTGGCCGTCGACCAGGAAAAAGAAGAGGCAGATTCAGACTCTGACCCCGGTCCCTGACACACCAGACCACACTGAGAAAAGAGCTGaaaaactttgtgtgtgtgtgtgt

Function

symbol description
trmt10a Predicted to enable tRNA (guanine(9)-N(1))-methyltransferase activity. Predicted to act upstream of or within methylation. Orthologous to human TRMT10A (tRNA methyltransferase 10A).

NR:

description
tRNA methyltransferase 10 homolog A-like

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821371.1 True 1285 mRNA 0.52 7 1508801 1519565

Neighbor

gene id symbol gene type direction distance location
ccdc96 NA coding upstream 3147 1488484 ~ 1505654 (+)
grpel1 grpel1,LOC102799061 coding upstream 30360 1468364 ~ 1478441 (+)
LOC120573524 NA coding upstream 618505 863318 ~ 890296 (+)
LOC120573671 LOC107990212,LOC107990219,LOC107990208 coding upstream 693592 812543 ~ 815209 (+)
LOC120573672 LOC105024657,LOC106023958 coding upstream 714922 790858 ~ 793879 (+)
spata6l NA coding downstream 3431 1522996 ~ 1543886 (+)
rap1gds1 rap1gds1 coding downstream 63164 1582729 ~ 1620850 (+)
paqr9 paqr9 coding downstream 219758 1739323 ~ 1742369 (+)
LOC120572142 NA coding downstream 519405 2038970 ~ 2102372 (+)
LOC120572444 NA coding downstream 690643 2210208 ~ 2210559 (+)
G140419 NA non-coding upstream 26129 1481701 ~ 1482672 (+)
G140392 NA non-coding upstream 72057 1436494 ~ 1436744 (+)
G140384 NA non-coding upstream 109136 1349055 ~ 1399665 (+)
G140376 NA non-coding upstream 138773 1321305 ~ 1370028 (+)
G140433 NA non-coding downstream 323 1519888 ~ 1521398 (+)
G140435 NA non-coding downstream 4185 1523750 ~ 1524151 (+)
G140463 NA non-coding downstream 55024 1574589 ~ 1574860 (+)
G140516 NA non-coding downstream 211817 1731382 ~ 1788374 (+)
G140518 NA non-coding downstream 229282 1748847 ~ 1751285 (+)
LOC120572292 NA other upstream 885766 621116 ~ 623035 (+)
G140263 NA other upstream 1172625 335882 ~ 336176 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other downstream 157645 1677210 ~ 1725468 (+)
G140582 NA other downstream 410058 1929623 ~ 2030627 (+)
G140594 NA other downstream 503027 2022592 ~ 2032225 (+)
G140613 NA other downstream 535874 2055439 ~ 2059367 (+)
ablim2 ablim2 other downstream 1308487 2828052 ~ 2954690 (+)

Expression


Co-expression Network