rtn3 (LOC103359706,LOC108242286)


Basic Information

Item Value
gene id rtn3
gene name LOC103359706,LOC108242286
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4447409 ~ 4479287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039821432.1
GACAGACATTTTACCGCATTTGTGCAGTTGCTTTGAAACTACAGTAAAATGGATCCAATGACTCAGTCCGCCCAGATATCATCGTCGCAAGGGCTTGCCGATGGACAAAATTCTGCTGCCAAAGAATCAAAGCTATCCGattcctttctttcctcttcgCCTGTATCTCTCATTCAGTCTCCTCAAGTTAAGGATCTGATCCATTGGCGAGACCCCAAGAAGTCGGGCTTGGTGTTTGGGCTgtccatgctgctgctgctgtcgctGGCAGCCTTCAGTGTCATCAGCGTGGCCTCCTACCTGCTGCTGGCCCTGCTCTGTGTCACCATCACCTTCCGCATCTACAAGTCTGTCGTCCAGGCAGTGCAGAAGTCCGGCGAGGGACACCCCTTCAAaACACTGATAGATAAGGATGTCAGCGTACCCCCAGAGACTTTCCGCAAGCACGTGGACGCCAGTCTGACCTACATCAACCGAGCCCTGAAGCAGATGAGCCGCCTCTTCCTGGTCGAGGACCTCGTGGACTCACTTAAGCTGGCTGTGGTCATGTGGCTGTTCACCTACGTAGGAGCTGTCTTCAATGGCATCACCATTCTCATCCTGGCTGACATCCTCCTCTTCGCTGTGCCTCCCGTCTACGAGAAGTACAAGACCCAGATTGATCAGTACATGGACCTGATTCGTACTCAAGTCAACACCACAATGGCCAAGTTGCAAGAGAAACTTCCCGGAGCTGTGAAGCGCAGCAAAACTGAATGATCAACCCCCCACCCTCCAAATTAGAAACCTCCATGTCACCATCATCctcatctccatctccatcttaGACCCCCTCACCTTCTGCTCCCCCTCTCCAGATAACCCCTGCCCCGAGTCTAACTCCTCCTCCCTACTCCATCAACCATCAGCCCCCCCTACTACACTGAACCTTGCTAGGTAGAAAATCTCTGAGCTACTCAATATTCAATGTAAAACTACTGCGCAGCTTAACTTGCAAGCATTAAAAAGAACTGTGCCTGTGCAGACAGGAAGCAGGTCGCTAGCGAGGAAGTGATGTAGCGGCGGGCCCTGACTGTCTGTGGGCGTGCCACAGGGGAATGGAGGCAGGGTCGAGTGAACTAGACTGAATCTATGACCTGGTTTTGTCATGTACAGCGAGCGGTGGGTGGATGATGGCTGTCTATGTCACAAAAAGCAAATGTCTGTACTTTAAACCACACATTTCCCTGATGGTAAATGGATCATTTAAGCTGGaaaagttaagaaaaaaaaagaaaaaaaaaatagaataaaagtAACCTTTTGGGTGTTATTGTGGCTAGTCTTATCCTGCTCTCGTGCTCTACAGTTGTTATGTGGATAGATATGAGTTGATTTTAGAGGCTAGTAATGGGTTTGCTGTTACTGATTGGCCTGTTATTGAGTTAGTTTCCATTCACCTTACAGGCACTTCTGTATCTAAGTTTCTGCAATGCActgaacttttattttattaaacccATGAGCAGGTTGAAATAAAAGGATTGGAACACTGA
>XM_039821433.1
CATTTTACCGCATTTGTGCAGTTGCTTTGAAACTACAGTAAAATGGATCCAATGACTCAGTCCGCCCAGATATCATCGTCGCAAGGGCTTGCCGATGGACAAAATTCTGCTGCCAAAGAATCAAAGCTATCCGTTAAGGATCTGATCCATTGGCGAGACCCCAAGAAGTCGGGCTTGGTGTTTGGGCTgtccatgctgctgctgctgtcgctGGCAGCCTTCAGTGTCATCAGCGTGGCCTCCTACCTGCTGCTGGCCCTGCTCTGTGTCACCATCACCTTCCGCATCTACAAGTCTGTCGTCCAGGCAGTGCAGAAGTCCGGCGAGGGACACCCCTTCAAaACACTGATAGATAAGGATGTCAGCGTACCCCCAGAGACTTTCCGCAAGCACGTGGACGCCAGTCTGACCTACATCAACCGAGCCCTGAAGCAGATGAGCCGCCTCTTCCTGGTCGAGGACCTCGTGGACTCACTTAAGCTGGCTGTGGTCATGTGGCTGTTCACCTACGTAGGAGCTGTCTTCAATGGCATCACCATTCTCATCCTGGCTGACATCCTCCTCTTCGCTGTGCCTCCCGTCTACGAGAAGTACAAGACCCAGATTGATCAGTACATGGACCTGATTCGTACTCAAGTCAACACCACAATGGCCAAGTTGCAAGAGAAACTTCCCGGAGCTGTGAAGCGCAGCAAAACTGAATGATCAACCCCCCACCCTCCAAATTAGAAACCTCCATGTCACCATCATCctcatctccatctccatcttaGACCCCCTCACCTTCTGCTCCCCCTCTCCAGATAACCCCTGCCCCGAGTCTAACTCCTCCTCCCTACTCCATCAACCATCAGCCCCCCCTACTACACTGAACCTTGCTAGGTAGAAAATCTCTGAGCTACTCAATATTCAATGTAAAACTACTGCGCAGCTTAACTTGCAAGCATTAAAAAGAACTGTGCCTGTGCAGACAGGAAGCAGGTCGCTAGCGAGGAAGTGATGTAGCGGCGGGCCCTGACTGTCTGTGGGCGTGCCACAGGGGAATGGAGGCAGGGTCGAGTGAACTAGACTGAATCTATGACCTGGTTTTGTCATGTACAGCGAGCGGTGGGTGGATGATGGCTGTCTATGTCACAAAAAGCAAATGTCTGTACTTTAAACCACACATTTCCCTGATGGTAAATGGATCATTTAAGCTGGaaaagttaagaaaaaaaaagaaaaaaaaaatagaataaaagtAACCTTTTGGGTGTTATTGTGGCTAGTCTTATCCTGCTCTCGTGCTCTACAGTTGTTATGTGGATAGATATGAGTTGATTTTAGAGGCTAGTAATGGGTTTGCTGTTACTGATTGGCCTGTTATTGAGTTAGTTTCCATTCACCTTACAGGCACTTCTGTATCTAAGTTTCTGCAATGCActgaacttttattttattaaacccATGAGCAGGTTGAAATAAAAGGATTGGAACACTGA
>XM_039821435.1
GACAGACATTTTACCGCATTTGTGCAGTTGCTTTGAAACTACAGTAAAATGGATCCAATGACTCAGTCCGCCCAGATATCATCGTCGCAAGGGCTTGCCGATGGACAAAATTCTGCTGCCAAAGAATCAAAGCTATCCGattcctttctttcctcttcgCCTGTATCTCTCATTCAGTCTCCTCAAGACAAAAGAATGGGCTCTGACAAGCCCTGTGAAGGTGTTGCGACATCCCTTCGCTTTCCTTCTCAACCTGGCTCATTCACCCCTGGTAATTACGGGAGTGAAGCAGGGCCGCCAGATGGACAACCGGATTCACCGATAAAGACCTCTCCTGTTTCAGAGCGAATAAAGGCACTGGAAGCTCTTGCTGCCAAAAAGAAGGAACCTGATTTTAGAAGCGACGGAGGTTTCTCTCACTTCAGGGACCGCCACCATGAAAAATCTCCTGCTGAGACACCCAATGAGAAAATTACGCCAACTGTCCAGAAAAGGGGAGGTTCTGCTGATCAGGAGTCACCGGAATCCCCCTTTGAAGTACTTGGAGATTTAAGACAAGCGAATGAATTTGAAGAAACAGAAGAGTGGATGAAGGCTCATTTACCTCCTGTGCCAGACTTTGATGCTGTACATTTAATCAAAGGCACCCTGACTTCAGACAATGTAAAATCAAAGGAGGAGAAGGACACTGGCGTAGTTATACCTGATGCTCCTGCTGCCTTTGCTGGTGTCCCTGATGCTTTCATGGATACTCCAGCTCAAGCTCCAAAACATAAGGATGAGTTGATTGATGCACCGAAGCAGACAAGTGTTGAGGAGGAGTCAGAGTTTGACCTTAGCTTTTTGCCAACAGCCTATATGTGGGATCAGCAGGAAAAATCAAGTGCCCAGGCTCCTTTAAATCTTGATATAATGCTTCCAGCTTCACCTGCACCTCCTGCAGGCTTTGACTCCCCATCTCCGCCTGCCTCTCCACCAGTTGGCACGGATGCTAAACATGTTTCGGAAGACAAGAAGACCATGTGGACTGAAGATCTGCAGCCCCCAGAGGCAAGCGAAGCTGACAGCTCAGGAGAGTCAGACGACACTGTAATTGAAGATAGTGTCCCTGTTCCTGCATCTATTCCTCCATCTTCTGATCCAGAAATTTCAAGTGATCCTACCCCTGCTTCTGCAGCTCCCAATCTTCCCACTGAGGAAAAGGAGACTCCTCCACCAAAGTCTGAGAGGAAACTAATGCAGGTTCCAACAATAAATGTTATTGAGACCGATGAGCCAAATTACAGTGATGAGGAGATGGAAATGGAGCTTGAAGTAGAGGAAGATGAGGATTATAAGGCTGTAAAAGACCTAGCCAGAGAGGCTCCAAAAACCCCAGAACCAGAGTCAGAGGACAGTAAAAATGAACCACCCATAACGCGCCCTTTAGAAACTGAATTCATGGAAGGCTACTCCCCTCCATCCTCACCGGTGGACTCTGATGCCGAATACTCTCCTAAACACAACCTACTCAAATCTCTACCTGAAACAGTACATCAGGAATCTGCATCAAAACCTGAGGCCCTACCCAATCAAGCACTGTCTGAAAAATCGAAGAACACTTCCAATAAAGTAAATGATGAACCCTCCCCTTTCATAGTAACGAATGAAGAAGTGGATTTCCAAGACAATGATGACGAGTGGTCCGATGAAGCACAACATGTCCTGGTCCAACCTTGCAAAACTGATCTTGCGTTAATGGAAACAACTCATTACACACAATCCAACATGGATGAAAAGAGCAACACAGCTGCAAAAGAGGCTTATATGGAGACGGCTTCCCTTTCTAAAACCAGCTTCATGCAAGATGATATATATGACAGACAATCATTTGATTATGATTACGATGCATCCGCTCCCTTGGATGACATGGACGACAAAGGGTTAAACAACGCTAAGGAGCGGTTTCTTTCTGATCCTTCTCAAATCCTCGTTGAACCACTGAATGCAAGCAGTCAAAATCTGGATGATTTAACTTCAGCGAATGATGACGAAGCCTTCACCAAGCCAGTTGGTCAGCCAACTATAGGAGAATATCCCCAAGACCCATATTCCTCTTTCCAAACTGAGACACTTAGCAGCACCATTGAGCAAGATTTAAGTAAGAAAATGACCACTGACATGGTTACAGATAACCTGTCAAATGGCAACTCCCTCCCGGCACAGAAATTTGACTCAAAGATCCAGCAGGACACAACAAGCGACCCTGACAGCTCACTTTCTGAGTCTACAGATAGCTTTGTGGAGTTCATGCGAGAGTGCCTGAAATCAAGGCAGGATGAAGAACCTTATGACACACACCAAGCTGTTCCTTCCAAGAACAAAGTCTGCAAAACTGGTTTGCCTCCTTCCCAGTCCCCTCCAACCATGGTGATGGATCTTGAACAAGAACGGCTTACTATCAATGCTCTCAAAGAGCTGGGCAGCAGtcaagaagaggaggaggaggatgaggaggcgTATCTCCAGTCAAAGGTTCTTGACCAGGGCAAAACTAACCCCAATGCTACATCTAAACAGCAGTCTTCCTTTACCTCAGTTCCTAATCCTCCATGTTCCCAAAGCAACCGTGTGTTTGACAGCACGTATTCCAAAGAGGTAGAAGCCATCGACGAATGGGTGGCTGAAGCCTATCATCTTGCTGAGCATGTCTTGACAGCAATAATAACCCACTTATCAGTTAAGGATCTGATCCATTGGCGAGACCCCAAGAAGTCGGGCTTGGTGTTTGGGCTgtccatgctgctgctgctgtcgctGGCAGCCTTCAGTGTCATCAGCGTGGCCTCCTACCTGCTGCTGGCCCTGCTCTGTGTCACCATCACCTTCCGCATCTACAAGTCTGTCGTCCAGGCAGTGCAGAAGTCCGGCGAGGGACACCCCTTCAAaACACTGATAGATAAGGATGTCAGCGTACCCCCAGAGACTTTCCGCAAGCACGTGGACGCCAGTCTGACCTACATCAACCGAGCCCTGAAGCAGATGAGCCGCCTCTTCCTGGTCGAGGACCTCGTGGACTCACTTAAGCTGGCTGTGGTCATGTGGCTGTTCACCTACGTAGGAGCTGTCTTCAATGGCATCACCATTCTCATCCTGGCTGACATCCTCCTCTTCGCTGTGCCTCCCGTCTACGAGAAGTACAAGACCCAGATTGATCAGTACATGGACCTGATTCGTACTCAAGTCAACACCACAATGGCCAAGTTGCAAGAGAAACTTCCCGGAGCTGTGAAGCGCAGCAAAACTGAATGATCAACCCCCCACCCTCCAAATTAGAAACCTCCATGTCACCATCATCctcatctccatctccatcttaGACCCCCTCACCTTCTGCTCCCCCTCTCCAGATAACCCCTGCCCCGAGTCTAACTCCTCCTCCCTACTCCATCAACCATCAGCCCCCCCTACTACACTGAACCTTGCTAGGTAGAAAATCTCTGAGCTACTCAATATTCAATGTAAAACTACTGCGCAGCTTAACTTGCAAGCATTAAAAAGAACTGTGCCTGTGCAGACAGGAAGCAGGTCGCTAGCGAGGAAGTGATGTAGCGGCGGGCCCTGACTGTCTGTGGGCGTGCCACAGGGGAATGGAGGCAGGGTCGAGTGAACTAGACTGAATCTATGACCTGGTTTTGTCATGTACAGCGAGCGGTGGGTGGATGATGGCTGTCTATGTCACAAAAAGCAAATGTCTGTACTTTAAACCACACATTTCCCTGATGGTAAATGGATCATTTAAGCTGGaaaagttaagaaaaaaaaagaaaaaaaaaatagaataaaagtAACCTTTTGGGTGTTATTGTGGCTAGTCTTATCCTGCTCTCGTGCTCTACAGTTGTTATGTGGATAGATATGAGTTGATTTTAGAGGCTAGTAATGGGTTTGCTGTTACTGATTGGCCTGTTATTGAGTTAGTTTCCATTCACCTTACAGGCACTTCTGTATCTAAGTTTCTGCAATGCActgaacttttattttattaaacccATGAGCAGGTTGAAATAAAAGGATTGGAACACTGA

Function

NR:

description
Reticulon-3

GO: NA

KEGG:

id description
K20723 RTN3; reticulon-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039821432.1 False 1535 mRNA 0.48 8 4447409 4479287
XM_039821433.1 False 1481 mRNA 0.48 7 4447415 4479287
XM_039821435.1 True 4067 mRNA 0.47 10 4447409 4479287

Neighbor

gene id symbol gene type direction distance location
LOC120572661 NA coding upstream 147819 4286328 ~ 4299590 (+)
si:ch211-212k18.7 NA coding upstream 164738 4271925 ~ 4282671 (+)
LOC120572240 NA coding upstream 194567 4236291 ~ 4252842 (+)
rwdd rwdd4 coding upstream 237054 4205927 ~ 4210355 (+)
LOC120573426 NA coding upstream 289255 4149918 ~ 4158154 (+)
si:dkey-28a3.2 NA coding downstream 18161 4497448 ~ 4511964 (+)
eml3 eml3,LOC100700327,LOC101475149 coding downstream 49411 4528698 ~ 4594420 (+)
mta2 mta2 coding downstream 117745 4597032 ~ 4641652 (+)
cth1 LOC104936466,LOC104960793 coding downstream 167236 4646523 ~ 4649189 (+)
taf6l taf6l coding downstream 171601 4650888 ~ 4663367 (+)
G141052 NA non-coding upstream 79072 4366561 ~ 4368337 (+)
G141054 LOC103391650,LOC104940820 non-coding upstream 87951 4358921 ~ 4359458 (+)
G141045 pygm,pygmb,LOC103391662,LOC106531364 non-coding upstream 105103 4332302 ~ 4342306 (+)
G141044 NA non-coding upstream 115422 4330856 ~ 4331987 (+)
G140925 NA non-coding upstream 772941 3674091 ~ 3674468 (+)
G141079 NA non-coding downstream 8453 4487740 ~ 4487994 (+)
G141080 NA non-coding downstream 8994 4488281 ~ 4488527 (+)
G141082 LOC103359705 non-coding downstream 10706 4489993 ~ 4490601 (+)
G141084 NA non-coding downstream 13390 4492677 ~ 4493034 (+)
G141093 NA non-coding downstream 162418 4641705 ~ 4664198 (+)
G141060 men1 other upstream 2462 4440638 ~ 4444947 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other upstream 131864 4313151 ~ 4315545 (+)
mllt3 mllt3 other upstream 1013606 3256513 ~ 3433803 (+)
ablim2 ablim2 other upstream 1492719 2828052 ~ 2954690 (+)
G140613 NA other upstream 2388042 2055439 ~ 2059367 (+)
G141063 NA other downstream 4405 4483692 ~ 4487607 (+)
trnaw-cca_15 NA other downstream 1757716 6237003 ~ 6237074 (+)
drap1 drap1 other downstream 2092434 6571721 ~ 6578757 (+)
LOC120573071 map3k11 other downstream 2109664 6588951 ~ 6640245 (+)
LOC120573538 NA other downstream 3237317 7716604 ~ 7721656 (+)

Expression


Co-expression Network